# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rsgA 516 1.006 1vns 609 1.570 1v1pA 211 1.706 b.40.2.2,d.15.6.1 108268,108269 2rfiA 285 3.986 1rxwA 336 5.070 a.60.7.1,c.120.1.2 98059,98060 1yewA 382 5.431 2qcvA 332 5.566 2o8jA 281 7.499 1t3bA 211 7.615 c.47.1.9,d.17.3.1 106341,106342 1cd31 152 9.472 1chkA 238 10.24 d.2.1.7 36999 2qmxA 283 12.20 1wcuA 153 12.43 1jaeA 471 14.16 b.71.1.1,c.1.8.1 27773,28760 1ta0A 197 14.19 c.108.1.16 106729 1dfaA 454 14.22 b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 1d3gA 367 15.10 c.1.4.1 28600 2prbA 196 15.18 1x8qA 184 16.21 b.60.1.1 114966 1ty0A 211 16.33 b.40.2.2,d.15.6.1 107440,107441 1ofgA 381 17.08 c.2.1.3,d.81.1.5 30064,39979 2b5nA 323 19.24 1fjgE 162 19.51 d.14.1.1,d.50.1.2 37553,38789 2icsA 379 20.30 b.92.1.8,c.1.9.14 137241,137242 1bd8A 156 21.58 d.211.1.1 19157 2ghtA 181 21.95 1v5dA 386 22.67 a.102.1.2 113537 2v9kA 530 23.85 2ikqA 270 24.39 2v9lA 274 25.11 1ndh 272 25.93 1s4cA 155 29.25 b.82.2.7 118860 2r3aA 300 29.46 2guyA 478 30.08 b.71.1.1,c.1.8.1 135754,135755 1j9yA 385 32.10 c.1.8.3 62791 1g94A 448 33.17 b.71.1.1,c.1.8.1 65169,65170 1uayA 242 33.57 c.2.1.2 88390 1prtA 234 37.34 d.166.1.1 42253 2rfmA 192 38.64 1z2cB 383 39.24 a.118.1.23 124377 2f42A 179 40.67 2q62A 247 41.81 1fo0B 112 42.56 b.1.1.1 20631 2b0oE 301 43.38 1bkcE 256 43.67 d.92.1.10 40333 2cy8A 453 43.96 3c3pA 210 45.15 1xo7A 166 45.55 b.62.1.1 115694 1e7uA 961 45.76 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1dyoA 160 46.04 b.18.1.7 23771 2cfuA 658 47.09 1lmeA 176 47.76 d.167.1.1 84629 2c9hA 444 48.00 2r5vA 357 48.28 1fo1A 271 50.06 c.10.2.3,d.58.7.2 30869,39213 2exnA 136 50.93 b.165.1.1 132562 1xeoA 168 51.03 d.167.1.1 121913 1u07A 90 51.47 d.212.1.2 112902 1prn 289 52.28 1vkdA 338 52.37 b.67.2.4 108644 2bywA 418 53.19 c.95.1.1,c.95.1.1 129498,129499 1ogiA 303 53.77 b.43.4.2,c.25.1.1 92914,92915 2a31A 223 54.41 b.47.1.2 126068 2jabA 136 55.40 2cftA 298 56.93 2b4vA 468 57.25 a.160.1.4,d.218.1.10 127864,127865 2ok3A 161 58.00 1qx4A 274 58.09 b.43.4.2,c.25.1.1 104624,104625 1f7zA 233 60.03 b.47.1.2 59681 1hynP 379 61.93 d.112.1.2 61408 1yp1A 202 62.10 2hq6A 185 62.27 2dp3A 257 63.04 2rh1A 500 63.08 1tuhA 156 63.80 d.17.4.11 107345 2imqX 282 65.58 1txkA 498 66.29 b.1.18.2,b.30.5.9 107425,107426 1nlqA 108 67.15 b.121.3.1 85853 1uumA 372 67.75 c.1.4.1 100010 1dcqA 278 68.06 d.211.1.1,g.45.1.1 19178,45326 2rjbA 455 68.25 2goyA 275 70.97 1kjlA 146 71.11 b.29.1.3 118689 2i6uA 307 71.28 1ajj 37 71.57 2ghpA 292 72.20 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1mkkA 96 72.36 g.17.1.1 79240 1tonA 235 74.16 b.47.1.2 26307 2nsmA 439 75.60 2o23A 265 75.78 c.2.1.2 138884 2f37A 251 76.93 2cf8H 257 77.51 2h2tB 175 79.38 2dznA 228 79.64 2covD 104 80.66 1g5aA 628 81.71 b.71.1.1,c.1.8.1 65152,65153 2fdsA 352 81.75 c.1.2.3 133320 2z7xB 520 81.75 1p2xA 159 81.83 a.40.1.1 104062 1fe0A 68 81.91 d.58.17.1 39345 2cmtA 172 85.73 2ha9A 446 85.76 1wzoA 246 85.86 2pviA 157 87.84 c.52.1.6 33302 2p4hX 322 88.02 2hjeA 221 88.53 2j1aA 150 88.63 2feaA 236 89.15 c.108.1.20 133327 1l6hA 69 89.40 a.52.1.1 77723