# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1lshB	319	4.952	f.7.1.1	74245
1yewA	382	6.058		
1wmxA	205	6.473	b.18.1.24	109418
1fjgK	129	18.64	c.55.4.1	33733
2uubE	162	24.11	d.14.1.1,d.50.1.2	139936,139937
1spvA	184	32.39	c.50.1.2	98957
1elkA	157	32.99	a.118.9.2	19217
1fe0A	68	36.09	d.58.17.1	39345
1cd31	152	38.47		
1j0pA	108	39.93	a.138.1.1	90743
1dpuA	99	40.48	a.4.5.16	16150
1jaeA	471	40.58	b.71.1.1,c.1.8.1	27773,28760
2p5qA	170	40.67		
1mkkA	96	41.46	g.17.1.1	79240
1nlqA	108	43.88	b.121.3.1	85853
1l6hA	69	44.00	a.52.1.1	77723
1z1dA	103	45.77	a.4.5.16	124351
1vhsA	175	49.65	d.108.1.1	100698
2covD	104	49.73		
2dtrA	226	53.05	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fjgE	162	54.27	d.14.1.1,d.50.1.2	37553,38789
2dx6A	159	54.75		
2fsrA	195	58.07	d.108.1.1	134036
1v1pA	211	60.43	b.40.2.2,d.15.6.1	108268,108269
2qmlA	198	65.26		
1ywyA	74	69.70	b.55.2.1	124166
2zcwA	202	76.17		
1wq8A	110	81.92	g.17.1.1	114832
1zgwA	139	84.08		
1g94A	448	87.80	b.71.1.1,c.1.8.1	65169,65170
1uayA	242	87.96	c.2.1.2	88390
1dyoA	160	88.24	b.18.1.7	23771