# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yewA	382	3.129		
1wmxA	205	3.528	b.18.1.24	109418
1lshB	319	4.703	f.7.1.1	74245
1fjgK	129	11.81	c.55.4.1	33733
2p5qA	170	19.21		
1cd31	152	21.57		
1spvA	184	21.70	c.50.1.2	98957
1fe0A	68	21.96	d.58.17.1	39345
2dx6A	159	22.20		
2uubE	162	24.61	d.14.1.1,d.50.1.2	139936,139937
1v1pA	211	25.10	b.40.2.2,d.15.6.1	108268,108269
1mkkA	96	28.66	g.17.1.1	79240
1j0pA	108	30.34	a.138.1.1	90743
1rsgA	516	30.83		
1dpuA	99	37.71	a.4.5.16	16150
1vhsA	175	39.30	d.108.1.1	100698
2qmlA	198	45.72		
1z1dA	103	46.25	a.4.5.16	124351
2ceyA	306	52.82		
1elkA	157	55.28	a.118.9.2	19217
2zcwA	202	55.34		
1nlqA	108	56.65	b.121.3.1	85853
2afcA	168	57.15	c.50.1.2	126676
1tx9A	151	58.78	a.84.1.1	119383
2covD	104	59.39		
2fsrA	195	61.81	d.108.1.1	134036
2dtrA	226	66.95	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1ywyA	74	66.96	b.55.2.1	124166
1wq8A	110	72.97	g.17.1.1	114832
1vr8A	142	82.70	d.312.1.1	120445
1ympA	135	83.96		
2z10A	194	84.19		
1l6hA	69	87.55	a.52.1.1	77723
1fjgE	162	88.55	d.14.1.1,d.50.1.2	37553,38789
3blnA	143	89.63		
1zgwA	139	89.75