# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yewA	382	3.138		
1lshB	319	7.472	f.7.1.1	74245
1fjgK	129	9.041	c.55.4.1	33733
1wmxA	205	10.43	b.18.1.24	109418
2dx6A	159	18.25		
1spvA	184	21.48	c.50.1.2	98957
1fe0A	68	24.39	d.58.17.1	39345
2qmlA	198	26.94		
1cd31	152	27.32		
2p5qA	170	29.35		
1elkA	157	30.12	a.118.9.2	19217
2uubE	162	30.95	d.14.1.1,d.50.1.2	139936,139937
1v1pA	211	40.39	b.40.2.2,d.15.6.1	108268,108269
1ywyA	74	43.80	b.55.2.1	124166
2covD	104	48.09		
1dpuA	99	49.58	a.4.5.16	16150
1vhsA	175	50.70	d.108.1.1	100698
3blnA	143	55.88		
1nlqA	108	56.11	b.121.3.1	85853
2bcoA	350	56.17	c.56.5.7	128302
1j0pA	108	56.98	a.138.1.1	90743
1rsgA	516	60.25		
2z10A	194	60.57		
2fsrA	195	64.16	d.108.1.1	134036
1mkkA	96	65.55	g.17.1.1	79240
1fjgE	162	67.29	d.14.1.1,d.50.1.2	37553,38789
1dyoA	160	68.06	b.18.1.7	23771
1yd9A	193	68.72	c.50.1.2	122976
1z1dA	103	71.38	a.4.5.16	124351
1ympA	135	73.39		
1aw8A	24	76.25	b.52.2.1	26901
2pdoA	144	76.98		
2r7hA	177	77.64		
1zr5A	214	82.19	c.50.1.2	125525
2afcA	168	83.48	c.50.1.2	126676
2ob0A	170	83.98		
2zcwA	202	85.15		
1njrA	284	89.06	c.50.1.2	103858