# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yewA	382	4.636		
1fe0A	68	30.01	d.58.17.1	39345
1z1dA	103	40.62	a.4.5.16	124351
1dpuA	99	45.11	a.4.5.16	16150
3blnA	143	49.37		
2ceyA	306	51.01		
1oqvA	192	57.24	d.24.1.2	87320
1vhsA	175	58.48	d.108.1.1	100698
2exnA	136	62.62	b.165.1.1	132562
2r7hA	177	63.99		
1h2sB	60	64.58	f.13.1.1	76579
1ywyA	74	64.94	b.55.2.1	124166
2cntA	160	66.72		
2pdoA	144	66.76		
1chkA	238	67.77	d.2.1.7	36999
2ob0A	170	68.57		
2gkgA	127	68.90		
1cd31	152	70.38		
1itbB	315	70.66	b.1.1.4,b.1.1.4,b.1.1.4	21720,21721,21722
2rddB	37	72.97		
2ckfB	174	74.90		
2p5qA	170	77.11		
1jaeA	471	79.46	b.71.1.1,c.1.8.1	27773,28760
1wixA	164	80.91	a.40.3.1	114683
2fiaA	162	81.02	d.108.1.1	133514
1yvhA	329	81.76	a.39.1.7,a.48.1.1,d.93.1.1	124096,124097,124098
2ok3A	161	89.62