# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1uscA	178	0.9071	b.45.1.2	99860
1foeA	377	2.937	a.87.1.1,b.55.1.1	18517,26969
1mkfA	382	5.002	b.116.1.1	79232
2r6vA	191	5.384		
2oj5A	165	9.827		
1o1yA	239	11.53	c.23.16.1	86554
1jy5A	212	11.73	d.124.1.1	71940
2pjdA	343	11.81		
1rthA	560	12.30	c.55.3.1,e.8.1.2	33576,43028
1g79A	218	14.36	b.45.1.1	25752
2b4vA	468	17.51	a.160.1.4,d.218.1.10	127864,127865
2jbrA	422	18.63		
2pd0A	223	19.26		
1y75A	118	19.56		
1yw1A	442	24.53	c.1.16.4	124130
3bb6A	127	27.97		
1yksA	440	29.16	c.37.1.14,c.37.1.14	123561,123562
1dtdB	61	31.33	g.30.1.1	44962
1kidA	203	31.38	c.8.5.1	30771
2d73A	738	31.84		
1n1tA	641	32.15	b.29.1.15,b.68.1.1	79821,79822
1smrA	335	32.15	b.50.1.2	26878
1ym0A	238	32.60		
1pp0A	199	32.79	d.103.1.1	104211
2bwkA	121	33.14		
1ig8A	486	35.19	c.55.1.3,c.55.1.3	64746,64747
1kid	203	37.49		
1nt0A	286	37.69	b.23.1.1,b.23.1.1,g.3.11.1	86143,86144,86145
1s7hA	200	39.50	d.58.48.2	105349
2cjqA	720	41.38		
1uldA	150	45.23	b.29.1.3	99545
2dtcA	126	45.70		
1ywyA	74	47.31	b.55.2.1	124166
1s6bA	119	47.41	a.133.1.2	98592
1xqbA	247	47.55	e.56.1.1	115839
1tt8A	164	58.44	d.190.1.1	112635
1to6A	371	59.56	c.141.1.1	107170
2p38A	166	60.90		
1tq4A	413	61.23	c.37.1.8	107201
2v8hA	474	61.75		
2h2zA	306	63.96		
1tz0A	114	67.23	d.58.4.5	107463
1u8vA	490	67.92	a.29.3.1,e.6.1.1	113196,113197
2ggrA	76	68.46		
1kvoA	124	70.69	a.133.1.2	19564
1iybA	208	77.10	d.124.1.1	90720
2q04A	211	77.85		
1p3hA	99	80.71	b.35.1.1	87734
1vqoM	195	82.12	d.12.1.2	120374
1ms9A	648	83.25	b.29.1.15,b.68.1.1	85088,85089
2o8lA	274	83.31	b.47.1.1	138932
1b8aA	438	85.61	b.40.4.1,d.104.1.1	25244,40765
1ozjA	144	85.98	d.164.1.1	93846
1yxhA	126	89.63