Best Alignments for T0398

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1li4A	3.3629e-09	1li4A/T0398-1li4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.3
1v8bA	1.1220e-08	1v8bA/T0398-1v8bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.3
2nacA	1.3167e-08	2nacA/T0398-2nacA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
2cukA	2.8958e-08	2cukA/T0398-2cukA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pjcA	3.2992e-08	1pjcA/T0398-1pjcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.2
2vhxA	5.5812e-08	2vhxA/T0398-2vhxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wwkA	5.7100e-08	1wwkA/T0398-1wwkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gcgA	6.3306e-08	2gcgA/T0398-2gcgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1mx3A	6.3342e-08	1mx3A/T0398-1mx3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
2j6iA	6.9056e-08	2j6iA/T0398-2j6iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dbqA	7.5360e-08	2dbqA/T0398-2dbqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1j4aA	8.2304e-08	1j4aA/T0398-1j4aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
1qp8A	1.0140e-07	1qp8A/T0398-1qp8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
2pi1A	1.0849e-07	2pi1A/T0398-2pi1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gdhA	1.0955e-07	1gdhA/T0398-1gdhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
2fssA	1.1837e-07	2fssA/T0398-2fssA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g76A	1.5220e-07	2g76A/T0398-2g76A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2vojA	1.6304e-07	2vojA/T0398-2vojA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ygyA	1.6886e-07	1ygyA/T0398-1ygyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2
2eklA	1.7330e-07	2eklA/T0398-2eklA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001