Best Alignments for T0398

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1j4aA	4.2286e-18	1j4aA/T0398-1j4aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
1ygyA	7.5793e-17	1ygyA/T0398-1ygyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2
2cukA	1.6046e-16	2cukA/T0398-2cukA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2nadA	2.7644e-16	2nadA/T0398-2nadA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
1gdhA	7.3403e-16	1gdhA/T0398-1gdhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
2g76A	9.9677e-16	2g76A/T0398-2g76A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1psdA	1.3451e-15	1psdA/T0398-1psdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1 d.58.18.1
2gcgA	1.4282e-15	2gcgA/T0398-2gcgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dbqA	1.4846e-15	2dbqA/T0398-2dbqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2eklA	1.7470e-15	2eklA/T0398-2eklA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2nacA	1.8322e-15	2nacA/T0398-2nacA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
2dldA	2.0649e-15	2dldA/T0398-2dldA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
1dxyA	2.1856e-15	1dxyA/T0398-1dxyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
1mx3A	2.9963e-15	1mx3A/T0398-1mx3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
2pi1A	3.1530e-15	2pi1A/T0398-2pi1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qp8A	4.2357e-15	1qp8A/T0398-1qp8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
2fssA	4.3692e-15	2fssA/T0398-2fssA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pjcA	5.4402e-15	1pjcA/T0398-1pjcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.2
1xdwA	5.5545e-15	1xdwA/T0398-1xdwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wwkA	6.9828e-15	1wwkA/T0398-1wwkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001