# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nacA 393 1.645 c.2.1.4,c.23.12.1 30088,31348 1wwkA 307 1.845 2vhxA 377 2.004 2g76A 335 2.106 2vojA 371 2.129 1gdhA 320 2.186 c.2.1.4,c.23.12.1 30095,31355 2fssA 365 2.195 2j6iA 364 2.320 2gcgA 330 2.333 2cukA 311 2.477 2dbqA 334 2.537 1b0aA 288 2.633 c.2.1.7,c.58.1.2 30286,33934 1v8bA 479 2.634 c.2.1.4,c.23.12.3 113564,113565 1ygyA 529 2.736 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2d0iA 333 2.896 1mx3A 347 2.993 c.2.1.4,c.23.12.1 79638,79639 2o4cA 380 2.995 1a4iA 301 3.089 c.2.1.7,c.58.1.2 30278,33926 1pjcA 361 3.237 c.2.1.4,c.23.12.2 30101,31361 1li4A 432 3.325 c.2.1.4,c.23.12.3 84616,84617 2pi1A 334 3.412 1dxy 333 3.511 1xdwA 331 3.574 1sc6A 404 3.734 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1dxyA 333 3.741 c.2.1.4,c.23.12.1 30094,31354 1qp8A 303 3.850 c.2.1.4,c.23.12.1 30092,31352 1x13A 401 3.922 2eklA 313 3.971 1j4aA 333 4.427 c.2.1.4,c.23.12.1 71502,71503 2c2xA 281 4.567 1l7dA 384 6.317 c.2.1.4,c.23.12.2 77774,77775 1vj0A 380 6.364 b.35.1.2,c.2.1.1 100786,100787 1edzA 320 6.483 c.2.1.7,c.58.1.2 30287,33935 1yqdA 366 7.042 2cf5A 357 7.291 1lluA 342 7.310 b.35.1.2,c.2.1.1 91064,91065 1f8fA 371 7.436 b.35.1.2,c.2.1.1 83246,83247 1pl8A 356 7.765 b.35.1.2,c.2.1.1 94878,94879 2ouiA 360 7.803 1uufA 369 7.861 b.35.1.2,c.2.1.1 100006,100007 1y9aA 360 8.723 1gpjA 404 9.052 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2hcyA 347 9.061 1p0fA 373 9.114 b.35.1.2,c.2.1.1 87642,87643 1kolA 398 9.345 b.35.1.2,c.2.1.1 77474,77475 1qorA 327 9.407 b.35.1.2,c.2.1.1 24766,29782 2eihA 343 9.408 1yb5A 351 9.544 b.35.1.2,c.2.1.1 116601,116602 1u3wA 374 9.703 b.35.1.2,c.2.1.1 113013,113014 2d8aA 348 9.782 1n8kA 374 9.888 b.35.1.2,c.2.1.1 80298,80299 1h2bA 359 10.06 b.35.1.2,c.2.1.1 90543,90544 2qrlA 394 10.08 2h6eA 344 10.15 1wlyA 333 10.19 2jhfA 374 10.29 b.35.1.2,c.2.1.1 138314,138315 1tt7A 330 10.54 b.35.1.2,c.2.1.1 112623,112624 2dm6A 333 10.86 b.35.1.2,c.2.1.1 131567,131568 1jvbA 347 11.36 b.35.1.2,c.2.1.1 77181,77182 1zsyA 357 11.82 1iz0A 302 11.91 b.35.1.2,c.2.1.1 83821,83822 2cdcA 366 12.82 2b5wA 357 13.55 2j3hA 345 14.69 1lehA 364 14.74 c.2.1.7,c.58.1.1 30268,33916 1o89A 345 14.99 b.35.1.2,c.2.1.1 92644,92645 1gu7A 364 15.69 b.35.1.2,c.2.1.1 83321,83322 1vj1A 363 17.11 b.35.1.2,c.2.1.1 100794,100795 1c1dA 355 17.26 c.2.1.7,c.58.1.1 30270,33918 2eggA 297 19.68 2hk9A 275 19.71 1nytA 271 22.96 c.2.1.7,c.58.1.5 86417,86418 2nloA 302 24.02 1x7dA 350 26.01 c.2.1.13 114927 1b26A 416 26.35 c.2.1.7,c.58.1.1 30232,33880 1b3bA 415 28.80 c.2.1.7,c.58.1.1 30244,33892 2d5cA 263 29.51 1omoA 322 30.84 c.2.1.13 104017 1luaA 287 31.39 c.2.1.7,c.58.1.4 78216,78217 1p77A 272 33.37 c.2.1.7,c.58.1.5 94214,94215 1bgvA 449 33.60 c.2.1.7,c.58.1.1 30217,33865 1vi2A 300 37.36 c.2.1.7,c.58.1.5 100726,100727 1npyA 271 40.01 c.2.1.7,c.58.1.5 85995,85996 1gtmA 419 40.03 c.2.1.7,c.58.1.1 30223,33871 1nvtA 287 40.72 c.2.1.7,c.58.1.5 86270,86271 2ahrA 259 41.16 a.100.1.10,c.2.1.6 126775,126776 1hwxA 501 41.97 c.2.1.7,c.58.1.1 30250,33898 2dvmA 439 42.01 2bmaA 470 42.52 1vpdA 299 48.78 a.100.1.1,c.2.1.6 113951,113952 1bg6A 359 51.06 a.100.1.5,c.2.1.6 18810,30214 3c24A 286 51.32 2g5cA 281 51.64 a.100.1.12,c.2.1.6 134646,134647 2o7sA 523 51.73 2h78A 302 51.94 1np3A 338 52.57 a.100.1.2,c.2.1.6 85946,85947 1ks9A 291 52.78 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 54.13 2f1kA 279 54.39 a.100.1.12,c.2.1.6 132772,132773 2ew2A 316 62.09 2izzA 322 62.51 1yqgA 263 64.23 1yb4A 295 68.75 1bg6 359 68.98 2pv7A 298 70.95 2gptA 523 72.88 1hdoA 206 75.38 c.2.1.2 60965 1qmgA 524 76.68 a.100.1.2,c.2.1.6 18785,30182 2graA 277 78.03 1f0yA 302 85.23 a.100.1.3,c.2.1.6 18793,30197 1qv9A 283 86.71 c.127.1.1 96356