# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2vhxA 377 1.688 2nacA 393 1.984 c.2.1.4,c.23.12.1 30088,31348 1wwkA 307 2.156 2vojA 371 2.243 1v8bA 479 2.458 c.2.1.4,c.23.12.3 113564,113565 1gdhA 320 2.495 c.2.1.4,c.23.12.1 30095,31355 1pjcA 361 2.507 c.2.1.4,c.23.12.2 30101,31361 2g76A 335 2.513 2gcgA 330 2.588 2fssA 365 2.649 1b0aA 288 2.668 c.2.1.7,c.58.1.2 30286,33934 2dbqA 334 2.877 2j6iA 364 2.880 2eklA 313 2.941 2cukA 311 3.068 1a4iA 301 3.129 c.2.1.7,c.58.1.2 30278,33926 1mx3A 347 3.195 c.2.1.4,c.23.12.1 79638,79639 1li4A 432 3.250 c.2.1.4,c.23.12.3 84616,84617 2o4cA 380 3.314 2d0iA 333 3.344 1ygyA 529 3.408 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2pi1A 334 4.097 2c2xA 281 4.178 1xdwA 331 4.194 1sc6A 404 4.238 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1x13A 401 4.274 1dxy 333 4.306 1dxyA 333 4.451 c.2.1.4,c.23.12.1 30094,31354 1j4aA 333 4.460 c.2.1.4,c.23.12.1 71502,71503 1qp8A 303 5.023 c.2.1.4,c.23.12.1 30092,31352 1l7dA 384 5.308 c.2.1.4,c.23.12.2 77774,77775 1vj0A 380 6.287 b.35.1.2,c.2.1.1 100786,100787 1yqdA 366 6.296 2cf5A 357 6.342 1pl8A 356 6.967 b.35.1.2,c.2.1.1 94878,94879 1lluA 342 7.047 b.35.1.2,c.2.1.1 91064,91065 1f8fA 371 7.073 b.35.1.2,c.2.1.1 83246,83247 2ouiA 360 7.107 1edzA 320 7.135 c.2.1.7,c.58.1.2 30287,33935 1y9aA 360 7.207 1uufA 369 7.659 b.35.1.2,c.2.1.1 100006,100007 1kolA 398 8.453 b.35.1.2,c.2.1.1 77474,77475 2hcyA 347 8.459 1p0fA 373 8.589 b.35.1.2,c.2.1.1 87642,87643 2jhfA 374 8.644 b.35.1.2,c.2.1.1 138314,138315 2eihA 343 8.678 2d8aA 348 8.680 1qorA 327 9.059 b.35.1.2,c.2.1.1 24766,29782 1u3wA 374 9.250 b.35.1.2,c.2.1.1 113013,113014 1n8kA 374 9.561 b.35.1.2,c.2.1.1 80298,80299 1gpjA 404 9.641 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1yb5A 351 9.682 b.35.1.2,c.2.1.1 116601,116602 1iz0A 302 9.699 b.35.1.2,c.2.1.1 83821,83822 1tt7A 330 9.95 b.35.1.2,c.2.1.1 112623,112624 2h6eA 344 9.99 1h2bA 359 10.59 b.35.1.2,c.2.1.1 90543,90544 1wlyA 333 10.78 1jvbA 347 10.82 b.35.1.2,c.2.1.1 77181,77182 1zsyA 357 11.08 2dm6A 333 11.46 b.35.1.2,c.2.1.1 131567,131568 1lehA 364 11.76 c.2.1.7,c.58.1.1 30268,33916 2qrlA 394 12.50 2cdcA 366 12.73 2j3hA 345 12.96 1o89A 345 14.35 b.35.1.2,c.2.1.1 92644,92645 1gu7A 364 14.91 b.35.1.2,c.2.1.1 83321,83322 1vj1A 363 15.05 b.35.1.2,c.2.1.1 100794,100795 2b5wA 357 15.50 1c1dA 355 17.09 c.2.1.7,c.58.1.1 30270,33918 1nytA 271 26.32 c.2.1.7,c.58.1.5 86417,86418 2eggA 297 26.91 2hk9A 275 27.89 1x7dA 350 28.09 c.2.1.13 114927 1bgvA 449 29.33 c.2.1.7,c.58.1.1 30217,33865 1b26A 416 32.01 c.2.1.7,c.58.1.1 30232,33880 1omoA 322 32.24 c.2.1.13 104017 1b3bA 415 34.48 c.2.1.7,c.58.1.1 30244,33892 2nloA 302 34.68 1p77A 272 36.74 c.2.1.7,c.58.1.5 94214,94215 2d5cA 263 37.01 1luaA 287 38.89 c.2.1.7,c.58.1.4 78216,78217 1gtmA 419 41.19 c.2.1.7,c.58.1.1 30223,33871 2dvmA 439 43.73 2bmaA 470 43.75 1vpdA 299 45.29 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 48.29 a.100.1.10,c.2.1.6 126775,126776 1vi2A 300 48.80 c.2.1.7,c.58.1.5 100726,100727 1bg6A 359 52.04 a.100.1.5,c.2.1.6 18810,30214 2f1kA 279 53.88 a.100.1.12,c.2.1.6 132772,132773 2g5cA 281 54.21 a.100.1.12,c.2.1.6 134646,134647 1hwxA 501 55.21 c.2.1.7,c.58.1.1 30250,33898 1nvtA 287 56.98 c.2.1.7,c.58.1.5 86270,86271 1bg6 359 58.11 1npyA 271 58.15 c.2.1.7,c.58.1.5 85995,85996 1np3A 338 58.21 a.100.1.2,c.2.1.6 85946,85947 1yrlA 491 59.08 2h78A 302 59.29 3c24A 286 64.97 2ew2A 316 66.18 1yb4A 295 66.79 1ks9A 291 67.23 a.100.1.7,c.2.1.6 68857,68858 2o7sA 523 67.91 1f0yA 302 77.04 a.100.1.3,c.2.1.6 18793,30197 2izzA 322 78.49 2dpoA 319 82.88 2pv7A 298 83.18 2a4kA 263 88.45 c.2.1.2 126156 2cvzA 289 88.78 a.100.1.1,c.2.1.6 130890,130891 1yqgA 263 89.51