# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2vhxA 377 0.5383 1wwkA 307 0.7090 2nacA 393 0.7094 c.2.1.4,c.23.12.1 30088,31348 2vojA 371 0.7329 1b0aA 288 0.8853 c.2.1.7,c.58.1.2 30286,33934 1gdhA 320 0.8987 c.2.1.4,c.23.12.1 30095,31355 1v8bA 479 0.9360 c.2.1.4,c.23.12.3 113564,113565 2fssA 365 0.9362 2gcgA 330 0.9573 2g76A 335 0.9618 1pjcA 361 0.9877 c.2.1.4,c.23.12.2 30101,31361 2j6iA 364 1.000 2cukA 311 1.029 2dbqA 334 1.040 1a4iA 301 1.080 c.2.1.7,c.58.1.2 30278,33926 1ygyA 529 1.184 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1li4A 432 1.257 c.2.1.4,c.23.12.3 84616,84617 2o4cA 380 1.323 2d0iA 333 1.326 1mx3A 347 1.340 c.2.1.4,c.23.12.1 79638,79639 2eklA 313 1.391 2pi1A 334 1.452 1sc6A 404 1.482 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1xdwA 331 1.513 1dxy 333 1.611 1x13A 401 1.648 2c2xA 281 1.685 1dxyA 333 1.710 c.2.1.4,c.23.12.1 30094,31354 1qp8A 303 1.900 c.2.1.4,c.23.12.1 30092,31352 1j4aA 333 1.952 c.2.1.4,c.23.12.1 71502,71503 1l7dA 384 2.230 c.2.1.4,c.23.12.2 77774,77775 1edzA 320 2.368 c.2.1.7,c.58.1.2 30287,33935 1vj0A 380 2.899 b.35.1.2,c.2.1.1 100786,100787 1yqdA 366 2.935 1lluA 342 3.200 b.35.1.2,c.2.1.1 91064,91065 1f8fA 371 3.266 b.35.1.2,c.2.1.1 83246,83247 1pl8A 356 3.332 b.35.1.2,c.2.1.1 94878,94879 2cf5A 357 3.365 2ouiA 360 3.559 1y9aA 360 3.620 1uufA 369 3.763 b.35.1.2,c.2.1.1 100006,100007 1p0fA 373 3.901 b.35.1.2,c.2.1.1 87642,87643 2hcyA 347 3.905 2d8aA 348 4.083 2qrlA 394 4.155 2jhfA 374 4.159 b.35.1.2,c.2.1.1 138314,138315 1kolA 398 4.184 b.35.1.2,c.2.1.1 77474,77475 2eihA 343 4.261 1u3wA 374 4.366 b.35.1.2,c.2.1.1 113013,113014 1yb5A 351 4.445 b.35.1.2,c.2.1.1 116601,116602 1h2bA 359 4.488 b.35.1.2,c.2.1.1 90543,90544 2h6eA 344 4.562 1gpjA 404 4.723 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1n8kA 374 4.748 b.35.1.2,c.2.1.1 80298,80299 1qorA 327 4.777 b.35.1.2,c.2.1.1 24766,29782 1wlyA 333 5.064 1jvbA 347 5.150 b.35.1.2,c.2.1.1 77181,77182 1tt7A 330 5.199 b.35.1.2,c.2.1.1 112623,112624 1iz0A 302 5.376 b.35.1.2,c.2.1.1 83821,83822 1zsyA 357 5.704 2dm6A 333 6.046 b.35.1.2,c.2.1.1 131567,131568 2cdcA 366 6.558 2b5wA 357 6.819 1o89A 345 7.160 b.35.1.2,c.2.1.1 92644,92645 2j3hA 345 7.293 1lehA 364 7.344 c.2.1.7,c.58.1.1 30268,33916 1gu7A 364 8.029 b.35.1.2,c.2.1.1 83321,83322 1vj1A 363 8.844 b.35.1.2,c.2.1.1 100794,100795 1c1dA 355 10.47 c.2.1.7,c.58.1.1 30270,33918 2eggA 297 13.01 1x7dA 350 13.59 c.2.1.13 114927 2hk9A 275 13.86 1nytA 271 16.15 c.2.1.7,c.58.1.5 86417,86418 2nloA 302 17.07 1omoA 322 17.09 c.2.1.13 104017 1b26A 416 18.31 c.2.1.7,c.58.1.1 30232,33880 1b3bA 415 19.05 c.2.1.7,c.58.1.1 30244,33892 1luaA 287 19.45 c.2.1.7,c.58.1.4 78216,78217 1bgvA 449 19.74 c.2.1.7,c.58.1.1 30217,33865 2d5cA 263 20.28 1p77A 272 21.77 c.2.1.7,c.58.1.5 94214,94215 2dvmA 439 25.54 1npyA 271 26.83 c.2.1.7,c.58.1.5 85995,85996 1vi2A 300 27.10 c.2.1.7,c.58.1.5 100726,100727 2bmaA 470 28.14 1vpdA 299 28.53 a.100.1.1,c.2.1.6 113951,113952 1nvtA 287 28.88 c.2.1.7,c.58.1.5 86270,86271 1gtmA 419 29.16 c.2.1.7,c.58.1.1 30223,33871 2ahrA 259 29.26 a.100.1.10,c.2.1.6 126775,126776 1bg6A 359 32.77 a.100.1.5,c.2.1.6 18810,30214 1hwxA 501 33.61 c.2.1.7,c.58.1.1 30250,33898 2f1kA 279 33.71 a.100.1.12,c.2.1.6 132772,132773 2o7sA 523 34.58 2g5cA 281 35.75 a.100.1.12,c.2.1.6 134646,134647 2h78A 302 36.74 1bg6 359 36.91 3c24A 286 37.27 1ks9A 291 39.27 a.100.1.7,c.2.1.6 68857,68858 1yb4A 295 39.41 1np3A 338 43.81 a.100.1.2,c.2.1.6 85946,85947 2ew2A 316 49.75 1yrlA 491 50.12 2izzA 322 50.98 1hdoA 206 51.80 c.2.1.2 60965 1yqgA 263 52.06 2cvzA 289 53.52 a.100.1.1,c.2.1.6 130890,130891 2gptA 523 54.63 2pv7A 298 58.86 1jayA 212 59.47 c.2.1.6 66478 1f0yA 302 60.55 a.100.1.3,c.2.1.6 18793,30197 2a4kA 263 60.62 c.2.1.2 126156 2graA 277 65.38 2dpoA 319 65.48 2v3aA 384 66.35 1hxhA 253 66.38 c.2.1.2 76725 1lssA 140 66.89 c.2.1.9 74246 1q1rA 431 67.30 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2bkaA 242 69.48 c.2.1.2 128666 1qmgA 524 70.42 a.100.1.2,c.2.1.6 18785,30182 1qv9A 283 70.67 c.127.1.1 96356 2cduA 452 70.96 2hmvA 144 70.99 c.2.1.9 136615 2gdzA 267 71.84 c.2.1.2 135043 1nhsA 447 71.98 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1xu9A 286 73.96 c.2.1.2 116052 1evyA 366 74.37 a.100.1.6,c.2.1.6 18811,30215 2exxA 306 74.73 1fl2A 310 75.57 c.3.1.5,c.3.1.5 59869,59870 1lsuA 147 75.67 c.2.1.9 74250 1yb1A 272 77.14 c.2.1.2 116599 1nhpA 447 78.13 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2o23A 265 78.90 c.2.1.2 138884 1nffA 260 79.97 c.2.1.2 80457 2i76A 276 81.58 1e6wA 260 83.92 c.2.1.2 59326 1ydeA 270 84.05 c.2.1.2 122980 1g0oA 283 84.48 c.2.1.2 60181 1k2wA 256 85.09 c.2.1.2 90927 1y1pA 342 85.53 c.2.1.2 122550 2aefA 234 85.63 1hyuA 521 85.63 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1jg1A 235 86.49 c.66.1.7 66661 2pgdA 482 86.71 a.100.1.1,c.2.1.6 18778,30190 1vl8A 267 86.73 c.2.1.2 108733 2bgkA 278 89.26 c.2.1.2 128480 2jahA 247 89.29 1id1A 153 89.43 c.2.1.9 62286 3c85A 183 89.53 2qytA 317 89.68