# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2vhxA 377 0.9769 2nacA 393 1.181 c.2.1.4,c.23.12.1 30088,31348 1wwkA 307 1.252 2vojA 371 1.287 1gdhA 320 1.496 c.2.1.4,c.23.12.1 30095,31355 1v8bA 479 1.546 c.2.1.4,c.23.12.3 113564,113565 2fssA 365 1.556 2g76A 335 1.617 2gcgA 330 1.635 1b0aA 288 1.662 c.2.1.7,c.58.1.2 30286,33934 2j6iA 364 1.695 2dbqA 334 1.705 1pjcA 361 1.708 c.2.1.4,c.23.12.2 30101,31361 2cukA 311 1.762 1a4iA 301 1.957 c.2.1.7,c.58.1.2 30278,33926 1ygyA 529 1.982 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1li4A 432 2.037 c.2.1.4,c.23.12.3 84616,84617 2o4cA 380 2.123 1mx3A 347 2.147 c.2.1.4,c.23.12.1 79638,79639 2d0iA 333 2.150 2pi1A 334 2.272 2eklA 313 2.401 1sc6A 404 2.414 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1xdwA 331 2.476 1dxy 333 2.531 1dxyA 333 2.683 c.2.1.4,c.23.12.1 30094,31354 1x13A 401 2.751 1j4aA 333 2.919 c.2.1.4,c.23.12.1 71502,71503 2c2xA 281 2.955 1qp8A 303 3.058 c.2.1.4,c.23.12.1 30092,31352 1l7dA 384 3.610 c.2.1.4,c.23.12.2 77774,77775 1edzA 320 3.958 c.2.1.7,c.58.1.2 30287,33935 1vj0A 380 4.238 b.35.1.2,c.2.1.1 100786,100787 1yqdA 366 4.457 1lluA 342 4.853 b.35.1.2,c.2.1.1 91064,91065 1f8fA 371 4.922 b.35.1.2,c.2.1.1 83246,83247 2cf5A 357 5.095 1pl8A 356 5.250 b.35.1.2,c.2.1.1 94878,94879 2ouiA 360 5.319 1uufA 369 5.331 b.35.1.2,c.2.1.1 100006,100007 1y9aA 360 5.492 1p0fA 373 5.766 b.35.1.2,c.2.1.1 87642,87643 2hcyA 347 5.831 2d8aA 348 6.162 2qrlA 394 6.191 1kolA 398 6.217 b.35.1.2,c.2.1.1 77474,77475 2jhfA 374 6.272 b.35.1.2,c.2.1.1 138314,138315 1u3wA 374 6.453 b.35.1.2,c.2.1.1 113013,113014 1h2bA 359 6.458 b.35.1.2,c.2.1.1 90543,90544 2eihA 343 6.472 1qorA 327 6.608 b.35.1.2,c.2.1.1 24766,29782 1gpjA 404 6.629 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2h6eA 344 6.735 1yb5A 351 6.757 b.35.1.2,c.2.1.1 116601,116602 1n8kA 374 7.071 b.35.1.2,c.2.1.1 80298,80299 1tt7A 330 7.225 b.35.1.2,c.2.1.1 112623,112624 1iz0A 302 7.387 b.35.1.2,c.2.1.1 83821,83822 1jvbA 347 7.428 b.35.1.2,c.2.1.1 77181,77182 1wlyA 333 7.512 1zsyA 357 8.239 2dm6A 333 8.709 b.35.1.2,c.2.1.1 131567,131568 2cdcA 366 8.890 2b5wA 357 9.530 1o89A 345 9.601 b.35.1.2,c.2.1.1 92644,92645 1lehA 364 9.927 c.2.1.7,c.58.1.1 30268,33916 1gu7A 364 11.02 b.35.1.2,c.2.1.1 83321,83322 2j3hA 345 11.07 1vj1A 363 12.62 b.35.1.2,c.2.1.1 100794,100795 1c1dA 355 13.79 c.2.1.7,c.58.1.1 30270,33918 2eggA 297 17.38 2hk9A 275 17.81 1x7dA 350 17.92 c.2.1.13 114927 1nytA 271 21.55 c.2.1.7,c.58.1.5 86417,86418 1omoA 322 22.17 c.2.1.13 104017 2nloA 302 22.56 1b26A 416 22.92 c.2.1.7,c.58.1.1 30232,33880 1b3bA 415 23.40 c.2.1.7,c.58.1.1 30244,33892 1bgvA 449 23.87 c.2.1.7,c.58.1.1 30217,33865 1luaA 287 24.84 c.2.1.7,c.58.1.4 78216,78217 2d5cA 263 25.94 1p77A 272 26.95 c.2.1.7,c.58.1.5 94214,94215 1vpdA 299 33.44 a.100.1.1,c.2.1.6 113951,113952 1npyA 271 33.76 c.2.1.7,c.58.1.5 85995,85996 1vi2A 300 34.39 c.2.1.7,c.58.1.5 100726,100727 1gtmA 419 35.72 c.2.1.7,c.58.1.1 30223,33871 1nvtA 287 36.17 c.2.1.7,c.58.1.5 86270,86271 2dvmA 439 36.52 2ahrA 259 37.07 a.100.1.10,c.2.1.6 126775,126776 2bmaA 470 37.86 1hwxA 501 39.46 c.2.1.7,c.58.1.1 30250,33898 1bg6A 359 39.52 a.100.1.5,c.2.1.6 18810,30214 2f1kA 279 41.76 a.100.1.12,c.2.1.6 132772,132773 2h78A 302 42.74 2o7sA 523 42.88 2g5cA 281 43.12 a.100.1.12,c.2.1.6 134646,134647 3c24A 286 44.10 1bg6 359 45.44 1ks9A 291 47.24 a.100.1.7,c.2.1.6 68857,68858 1yb4A 295 47.77 1np3A 338 53.33 a.100.1.2,c.2.1.6 85946,85947 2ew2A 316 54.14 2cvzA 289 58.50 a.100.1.1,c.2.1.6 130890,130891 1hdoA 206 58.97 c.2.1.2 60965 1yrlA 491 60.99 1yqgA 263 63.81 2izzA 322 63.83 2gptA 523 66.36 2pv7A 298 68.12 1f0yA 302 68.34 a.100.1.3,c.2.1.6 18793,30197 1jayA 212 68.44 c.2.1.6 66478 2a4kA 263 69.15 c.2.1.2 126156 2dpoA 319 74.71 1qv9A 283 75.76 c.127.1.1 96356 1qmgA 524 77.65 a.100.1.2,c.2.1.6 18785,30182 1hxhA 253 79.81 c.2.1.2 76725 1lssA 140 82.02 c.2.1.9 74246 2graA 277 82.70 2bkaA 242 83.19 c.2.1.2 128666 2hmvA 144 84.81 c.2.1.9 136615 1q1rA 431 86.38 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2gdzA 267 86.86 c.2.1.2 135043 1xu9A 286 87.75 c.2.1.2 116052 2exxA 306 87.84 1yb1A 272 88.91 c.2.1.2 116599 1evyA 366 89.17 a.100.1.6,c.2.1.6 18811,30215