# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2vhxA 377 0.5912 2nacA 393 0.6954 c.2.1.4,c.23.12.1 30088,31348 1wwkA 307 0.7135 2vojA 371 0.7786 1gdhA 320 0.9008 c.2.1.4,c.23.12.1 30095,31355 1v8bA 479 0.9227 c.2.1.4,c.23.12.3 113564,113565 2fssA 365 0.9392 2g76A 335 0.9536 1b0aA 288 0.9677 c.2.1.7,c.58.1.2 30286,33934 2gcgA 330 0.9735 2j6iA 364 1.026 2dbqA 334 1.027 2cukA 311 1.044 1pjcA 361 1.076 c.2.1.4,c.23.12.2 30101,31361 1a4iA 301 1.189 c.2.1.7,c.58.1.2 30278,33926 1ygyA 529 1.221 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1li4A 432 1.298 c.2.1.4,c.23.12.3 84616,84617 2d0iA 333 1.311 1mx3A 347 1.318 c.2.1.4,c.23.12.1 79638,79639 2o4cA 380 1.322 2pi1A 334 1.485 1sc6A 404 1.507 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2eklA 313 1.510 1xdwA 331 1.557 1dxy 333 1.639 1dxyA 333 1.725 c.2.1.4,c.23.12.1 30094,31354 1x13A 401 1.834 2c2xA 281 1.894 1qp8A 303 1.930 c.2.1.4,c.23.12.1 30092,31352 1j4aA 333 2.010 c.2.1.4,c.23.12.1 71502,71503 1l7dA 384 2.422 c.2.1.4,c.23.12.2 77774,77775 1edzA 320 2.577 c.2.1.7,c.58.1.2 30287,33935 1vj0A 380 2.963 b.35.1.2,c.2.1.1 100786,100787 1yqdA 366 3.104 1lluA 342 3.337 b.35.1.2,c.2.1.1 91064,91065 1f8fA 371 3.412 b.35.1.2,c.2.1.1 83246,83247 1pl8A 356 3.610 b.35.1.2,c.2.1.1 94878,94879 2cf5A 357 3.655 2ouiA 360 3.690 1y9aA 360 3.819 1uufA 369 4.086 b.35.1.2,c.2.1.1 100006,100007 1p0fA 373 4.106 b.35.1.2,c.2.1.1 87642,87643 2hcyA 347 4.168 2d8aA 348 4.329 2jhfA 374 4.469 b.35.1.2,c.2.1.1 138314,138315 2eihA 343 4.497 2qrlA 394 4.561 1kolA 398 4.599 b.35.1.2,c.2.1.1 77474,77475 1h2bA 359 4.600 b.35.1.2,c.2.1.1 90543,90544 1u3wA 374 4.675 b.35.1.2,c.2.1.1 113013,113014 2h6eA 344 4.716 1qorA 327 4.779 b.35.1.2,c.2.1.1 24766,29782 1yb5A 351 4.863 b.35.1.2,c.2.1.1 116601,116602 1gpjA 404 4.871 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1n8kA 374 5.031 b.35.1.2,c.2.1.1 80298,80299 1tt7A 330 5.102 b.35.1.2,c.2.1.1 112623,112624 1wlyA 333 5.323 1iz0A 302 5.335 b.35.1.2,c.2.1.1 83821,83822 1jvbA 347 5.433 b.35.1.2,c.2.1.1 77181,77182 1zsyA 357 5.708 2dm6A 333 6.212 b.35.1.2,c.2.1.1 131567,131568 2cdcA 366 6.598 2b5wA 357 7.100 1o89A 345 7.237 b.35.1.2,c.2.1.1 92644,92645 1lehA 364 7.410 c.2.1.7,c.58.1.1 30268,33916 2j3hA 345 7.637 1gu7A 364 8.000 b.35.1.2,c.2.1.1 83321,83322 1vj1A 363 8.983 b.35.1.2,c.2.1.1 100794,100795 1c1dA 355 10.52 c.2.1.7,c.58.1.1 30270,33918 1x7dA 350 13.12 c.2.1.13 114927 2eggA 297 13.87 2hk9A 275 14.10 1nytA 271 16.82 c.2.1.7,c.58.1.5 86417,86418 1omoA 322 17.34 c.2.1.13 104017 2nloA 302 17.42 1b26A 416 18.82 c.2.1.7,c.58.1.1 30232,33880 1b3bA 415 19.12 c.2.1.7,c.58.1.1 30244,33892 1bgvA 449 20.30 c.2.1.7,c.58.1.1 30217,33865 1luaA 287 20.52 c.2.1.7,c.58.1.4 78216,78217 2d5cA 263 20.70 1p77A 272 22.93 c.2.1.7,c.58.1.5 94214,94215 1vpdA 299 26.92 a.100.1.1,c.2.1.6 113951,113952 1vi2A 300 28.54 c.2.1.7,c.58.1.5 100726,100727 1npyA 271 29.15 c.2.1.7,c.58.1.5 85995,85996 2ahrA 259 29.57 a.100.1.10,c.2.1.6 126775,126776 2dvmA 439 30.00 1gtmA 419 30.17 c.2.1.7,c.58.1.1 30223,33871 1nvtA 287 30.42 c.2.1.7,c.58.1.5 86270,86271 2bmaA 470 31.89 1bg6A 359 31.97 a.100.1.5,c.2.1.6 18810,30214 1hwxA 501 32.85 c.2.1.7,c.58.1.1 30250,33898 2f1kA 279 32.85 a.100.1.12,c.2.1.6 132772,132773 1bg6 359 34.65 2g5cA 281 34.98 a.100.1.12,c.2.1.6 134646,134647 3c24A 286 35.48 2o7sA 523 36.24 2h78A 302 37.18 1yb4A 295 37.99 1ks9A 291 41.57 a.100.1.7,c.2.1.6 68857,68858 1np3A 338 43.70 a.100.1.2,c.2.1.6 85946,85947 2ew2A 316 45.26 1yrlA 491 49.52 2cvzA 289 49.91 a.100.1.1,c.2.1.6 130890,130891 2izzA 322 52.98 1yqgA 263 53.32 1hdoA 206 53.58 c.2.1.2 60965 2pv7A 298 54.63 2a4kA 263 55.51 c.2.1.2 126156 2gptA 523 56.39 1f0yA 302 57.32 a.100.1.3,c.2.1.6 18793,30197 1jayA 212 57.39 c.2.1.6 66478 1hxhA 253 65.12 c.2.1.2 76725 2dpoA 319 65.59 1qv9A 283 66.68 c.127.1.1 96356 1lssA 140 67.50 c.2.1.9 74246 1qmgA 524 67.66 a.100.1.2,c.2.1.6 18785,30182 2hmvA 144 71.05 c.2.1.9 136615 2graA 277 71.14 2bkaA 242 72.45 c.2.1.2 128666 2gdzA 267 74.48 c.2.1.2 135043 1yb1A 272 74.90 c.2.1.2 116599 1q1rA 431 75.34 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1xu9A 286 75.82 c.2.1.2 116052 2v3aA 384 75.84 1evyA 366 75.95 a.100.1.6,c.2.1.6 18811,30215 1nffA 260 76.85 c.2.1.2 80457 1lsuA 147 78.20 c.2.1.9 74250 2o23A 265 80.18 c.2.1.2 138884 2exxA 306 81.43 2cduA 452 81.81 1ydeA 270 82.01 c.2.1.2 122980 1g0oA 283 82.24 c.2.1.2 60181 2i76A 276 82.68 1k2wA 256 83.19 c.2.1.2 90927 2pgdA 482 83.85 a.100.1.1,c.2.1.6 18778,30190 1vl8A 267 84.06 c.2.1.2 108733 1fl2A 310 84.76 c.3.1.5,c.3.1.5 59869,59870 1nhsA 447 85.11 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2qytA 317 85.62 2jahA 247 85.73 1zcjA 463 85.88 2bgkA 278 85.90 c.2.1.2 128480 2axqA 467 85.95 1e6wA 260 86.82 c.2.1.2 59326 2nm0A 253 87.31 1id1A 153 87.41 c.2.1.9 62286 1y1pA 342 87.63 c.2.1.2 122550 1txgA 335 87.82 a.100.1.6,c.2.1.6 112775,112776 1fmcA 255 88.20 c.2.1.2 29856 1nhpA 447 88.96 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1yxmA 303 89.50 c.2.1.2 124192