# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2vhxA 377 1.585 2vojA 371 1.890 1wwkA 307 1.922 2nacA 393 2.158 c.2.1.4,c.23.12.1 30088,31348 2g76A 335 2.299 1gdhA 320 2.367 c.2.1.4,c.23.12.1 30095,31355 2gcgA 330 2.451 2eklA 313 2.567 1pjcA 361 2.575 c.2.1.4,c.23.12.2 30101,31361 2cukA 311 2.628 2dbqA 334 2.665 1v8bA 479 2.683 c.2.1.4,c.23.12.3 113564,113565 2fssA 365 2.899 2j6iA 364 3.132 1ygyA 529 3.199 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1mx3A 347 3.291 c.2.1.4,c.23.12.1 79638,79639 1b0aA 288 3.302 c.2.1.7,c.58.1.2 30286,33934 1li4A 432 3.450 c.2.1.4,c.23.12.3 84616,84617 1a4iA 301 3.468 c.2.1.7,c.58.1.2 30278,33926 2d0iA 333 3.646 2pi1A 334 3.751 1xdwA 331 3.843 2o4cA 380 3.933 1x13A 401 4.138 1dxy 333 4.216 1qp8A 303 4.333 c.2.1.4,c.23.12.1 30092,31352 1sc6A 404 4.384 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1dxyA 333 4.565 c.2.1.4,c.23.12.1 30094,31354 1j4aA 333 4.869 c.2.1.4,c.23.12.1 71502,71503 2c2xA 281 5.237 1l7dA 384 5.273 c.2.1.4,c.23.12.2 77774,77775 1vj0A 380 7.513 b.35.1.2,c.2.1.1 100786,100787 1edzA 320 7.855 c.2.1.7,c.58.1.2 30287,33935 2cf5A 357 8.277 1yqdA 366 9.091 2hcyA 347 9.283 1gpjA 404 9.546 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2eihA 343 9.569 1uufA 369 9.919 b.35.1.2,c.2.1.1 100006,100007 1f8fA 371 9.97 b.35.1.2,c.2.1.1 83246,83247 1pl8A 356 10.18 b.35.1.2,c.2.1.1 94878,94879 2ouiA 360 10.26 1lluA 342 10.67 b.35.1.2,c.2.1.1 91064,91065 1y9aA 360 10.85 1yb5A 351 11.58 b.35.1.2,c.2.1.1 116601,116602 2d8aA 348 11.59 1kolA 398 11.63 b.35.1.2,c.2.1.1 77474,77475 1tt7A 330 12.15 b.35.1.2,c.2.1.1 112623,112624 1p0fA 373 12.15 b.35.1.2,c.2.1.1 87642,87643 2h6eA 344 12.21 2jhfA 374 12.37 b.35.1.2,c.2.1.1 138314,138315 1u3wA 374 12.39 b.35.1.2,c.2.1.1 113013,113014 1qorA 327 12.82 b.35.1.2,c.2.1.1 24766,29782 1iz0A 302 12.90 b.35.1.2,c.2.1.1 83821,83822 2qrlA 394 12.93 1n8kA 374 13.23 b.35.1.2,c.2.1.1 80298,80299 1wlyA 333 13.31 1jvbA 347 13.55 b.35.1.2,c.2.1.1 77181,77182 1h2bA 359 14.11 b.35.1.2,c.2.1.1 90543,90544 2dm6A 333 14.83 b.35.1.2,c.2.1.1 131567,131568 2j3hA 345 15.11 1lehA 364 15.60 c.2.1.7,c.58.1.1 30268,33916 1o89A 345 15.66 b.35.1.2,c.2.1.1 92644,92645 1zsyA 357 16.09 2cdcA 366 16.59 1vj1A 363 19.42 b.35.1.2,c.2.1.1 100794,100795 1c1dA 355 19.70 c.2.1.7,c.58.1.1 30270,33918 2b5wA 357 20.60 1gu7A 364 22.24 b.35.1.2,c.2.1.1 83321,83322 1x7dA 350 24.01 c.2.1.13 114927 2hk9A 275 26.20 2eggA 297 26.70 1nytA 271 29.22 c.2.1.7,c.58.1.5 86417,86418 2nloA 302 30.43 1omoA 322 32.16 c.2.1.13 104017 1luaA 287 36.70 c.2.1.7,c.58.1.4 78216,78217 1bgvA 449 39.12 c.2.1.7,c.58.1.1 30217,33865 1b26A 416 40.15 c.2.1.7,c.58.1.1 30232,33880 1p77A 272 41.74 c.2.1.7,c.58.1.5 94214,94215 1b3bA 415 42.04 c.2.1.7,c.58.1.1 30244,33892 2d5cA 263 42.67 1vi2A 300 43.82 c.2.1.7,c.58.1.5 100726,100727 1vpdA 299 44.68 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 50.61 a.100.1.10,c.2.1.6 126775,126776 2dvmA 439 51.96 2bmaA 470 52.19 3c24A 286 53.63 2g5cA 281 54.98 a.100.1.12,c.2.1.6 134646,134647 2h78A 302 56.03 1yb4A 295 56.97 1nvtA 287 57.40 c.2.1.7,c.58.1.5 86270,86271 1gtmA 419 57.83 c.2.1.7,c.58.1.1 30223,33871 2f1kA 279 60.59 a.100.1.12,c.2.1.6 132772,132773 1bg6 359 60.66 2o7sA 523 62.12 1bg6A 359 68.00 a.100.1.5,c.2.1.6 18810,30214 1npyA 271 68.17 c.2.1.7,c.58.1.5 85995,85996 1yrlA 491 69.48 1ks9A 291 74.81 a.100.1.7,c.2.1.6 68857,68858 1np3A 338 77.05 a.100.1.2,c.2.1.6 85946,85947 1hwxA 501 77.47 c.2.1.7,c.58.1.1 30250,33898 1yb1A 272 79.49 c.2.1.2 116599 1hdoA 206 80.44 c.2.1.2 60965 2izzA 322 80.78 2graA 277 85.37 1f0yA 302 85.46 a.100.1.3,c.2.1.6 18793,30197 2ew2A 316 85.70