# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2vhxA 377 0.3497 2nacA 393 0.4701 c.2.1.4,c.23.12.1 30088,31348 2vojA 371 0.5025 1wwkA 307 0.5109 1gdhA 320 0.6113 c.2.1.4,c.23.12.1 30095,31355 2g76A 335 0.6372 1pjcA 361 0.6613 c.2.1.4,c.23.12.2 30101,31361 1b0aA 288 0.6812 c.2.1.7,c.58.1.2 30286,33934 2gcgA 330 0.6855 2fssA 365 0.7114 1v8bA 479 0.7190 c.2.1.4,c.23.12.3 113564,113565 2j6iA 364 0.7450 2dbqA 334 0.7484 2cukA 311 0.7641 1a4iA 301 0.8100 c.2.1.7,c.58.1.2 30278,33926 1mx3A 347 0.8341 c.2.1.4,c.23.12.1 79638,79639 1li4A 432 0.9210 c.2.1.4,c.23.12.3 84616,84617 1ygyA 529 0.9318 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2d0iA 333 0.9565 2o4cA 380 0.9566 2eklA 313 1.019 1xdwA 331 1.124 2pi1A 334 1.185 1x13A 401 1.194 1dxy 333 1.196 1dxyA 333 1.221 c.2.1.4,c.23.12.1 30094,31354 1sc6A 404 1.251 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1qp8A 303 1.308 c.2.1.4,c.23.12.1 30092,31352 1j4aA 333 1.359 c.2.1.4,c.23.12.1 71502,71503 2c2xA 281 1.409 1l7dA 384 1.596 c.2.1.4,c.23.12.2 77774,77775 1edzA 320 2.173 c.2.1.7,c.58.1.2 30287,33935 1yqdA 366 2.224 1vj0A 380 2.246 b.35.1.2,c.2.1.1 100786,100787 2cf5A 357 2.441 1pl8A 356 2.569 b.35.1.2,c.2.1.1 94878,94879 1lluA 342 2.614 b.35.1.2,c.2.1.1 91064,91065 1f8fA 371 2.836 b.35.1.2,c.2.1.1 83246,83247 2ouiA 360 2.944 1uufA 369 2.973 b.35.1.2,c.2.1.1 100006,100007 1y9aA 360 3.050 2hcyA 347 3.095 1kolA 398 3.226 b.35.1.2,c.2.1.1 77474,77475 2qrlA 394 3.235 1yb5A 351 3.330 b.35.1.2,c.2.1.1 116601,116602 1h2bA 359 3.429 b.35.1.2,c.2.1.1 90543,90544 2eihA 343 3.440 2d8aA 348 3.456 1gpjA 404 3.461 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2jhfA 374 3.520 b.35.1.2,c.2.1.1 138314,138315 1qorA 327 3.558 b.35.1.2,c.2.1.1 24766,29782 1p0fA 373 3.565 b.35.1.2,c.2.1.1 87642,87643 1iz0A 302 3.670 b.35.1.2,c.2.1.1 83821,83822 1n8kA 374 3.958 b.35.1.2,c.2.1.1 80298,80299 1u3wA 374 4.007 b.35.1.2,c.2.1.1 113013,113014 2h6eA 344 4.109 1tt7A 330 4.222 b.35.1.2,c.2.1.1 112623,112624 1jvbA 347 4.266 b.35.1.2,c.2.1.1 77181,77182 2cdcA 366 4.411 1zsyA 357 4.440 1wlyA 333 4.499 2dm6A 333 4.800 b.35.1.2,c.2.1.1 131567,131568 2b5wA 357 5.868 1lehA 364 6.140 c.2.1.7,c.58.1.1 30268,33916 2j3hA 345 6.263 1vj1A 363 6.765 b.35.1.2,c.2.1.1 100794,100795 1gu7A 364 6.977 b.35.1.2,c.2.1.1 83321,83322 1o89A 345 7.263 b.35.1.2,c.2.1.1 92644,92645 1c1dA 355 7.464 c.2.1.7,c.58.1.1 30270,33918 2eggA 297 9.932 2hk9A 275 10.54 2nloA 302 11.45 1nytA 271 12.15 c.2.1.7,c.58.1.5 86417,86418 1x7dA 350 12.44 c.2.1.13 114927 1b26A 416 14.97 c.2.1.7,c.58.1.1 30232,33880 1bgvA 449 14.97 c.2.1.7,c.58.1.1 30217,33865 1omoA 322 15.00 c.2.1.13 104017 1luaA 287 15.48 c.2.1.7,c.58.1.4 78216,78217 2d5cA 263 15.85 1b3bA 415 16.30 c.2.1.7,c.58.1.1 30244,33892 1p77A 272 17.63 c.2.1.7,c.58.1.5 94214,94215 2bmaA 470 20.69 1nvtA 287 20.99 c.2.1.7,c.58.1.5 86270,86271 1vi2A 300 21.08 c.2.1.7,c.58.1.5 100726,100727 2dvmA 439 21.45 1vpdA 299 22.51 a.100.1.1,c.2.1.6 113951,113952 1gtmA 419 22.98 c.2.1.7,c.58.1.1 30223,33871 1hwxA 501 23.24 c.2.1.7,c.58.1.1 30250,33898 1npyA 271 23.66 c.2.1.7,c.58.1.5 85995,85996 2ahrA 259 26.64 a.100.1.10,c.2.1.6 126775,126776 2h78A 302 28.69 2o7sA 523 28.83 1bg6A 359 28.93 a.100.1.5,c.2.1.6 18810,30214 2f1kA 279 31.56 a.100.1.12,c.2.1.6 132772,132773 1yb4A 295 31.86 2g5cA 281 32.72 a.100.1.12,c.2.1.6 134646,134647 1ks9A 291 32.80 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 33.20 1bg6 359 35.60 3c24A 286 36.39 1np3A 338 36.48 a.100.1.2,c.2.1.6 85946,85947 2ew2A 316 37.47 2izzA 322 41.86 1yqgA 263 47.63 1f0yA 302 47.94 a.100.1.3,c.2.1.6 18793,30197 1jayA 212 48.29 c.2.1.6 66478 2pv7A 298 48.58 1lssA 140 51.70 c.2.1.9 74246 2dpoA 319 51.90 2gptA 523 52.42 2graA 277 54.96 1qmgA 524 57.80 a.100.1.2,c.2.1.6 18785,30182 2hmvA 144 62.31 c.2.1.9 136615 1qv9A 283 62.32 c.127.1.1 96356 1jg1A 235 63.15 c.66.1.7 66661 2bkaA 242 64.36 c.2.1.2 128666 2cvzA 289 64.38 a.100.1.1,c.2.1.6 130890,130891 2gdzA 267 65.25 c.2.1.2 135043 1hdoA 206 65.43 c.2.1.2 60965 2pgdA 482 66.11 a.100.1.1,c.2.1.6 18778,30190 2v3aA 384 67.21 1hxhA 253 69.73 c.2.1.2 76725 2i76A 276 70.52 1xu9A 286 71.66 c.2.1.2 116052 1lsuA 147 72.93 c.2.1.9 74250 1yb1A 272 73.03 c.2.1.2 116599 1y1pA 342 73.29 c.2.1.2 122550 1evyA 366 74.20 a.100.1.6,c.2.1.6 18811,30215 3c85A 183 74.75 2gasA 307 75.49 1dl5A 317 76.95 c.66.1.7,d.197.1.1 64720,64721 2qytA 317 77.24 2p4qA 497 78.66 1id1A 153 78.88 c.2.1.9 62286 1ydeA 270 78.89 c.2.1.2 122980 1e6wA 260 79.04 c.2.1.2 59326 2o23A 265 79.20 c.2.1.2 138884 2cduA 452 79.47 1ff9A 450 79.59 c.2.1.3,d.81.1.2 30039,39954 1kpgA 287 80.02 c.66.1.18 68735 2exxA 306 80.25 1hyuA 521 81.27 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1sb8A 352 81.36 c.2.1.2 105410 1nffA 260 81.96 c.2.1.2 80457 1q1rA 431 82.13 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1yxmA 303 82.96 c.2.1.2 124192 1ml4A 308 84.77 c.78.1.1,c.78.1.1 79255,79256 2a4kA 263 85.36 c.2.1.2 126156 2gn4A 344 85.65 2r6jA 318 85.87 1o54A 277 86.05 c.66.1.13 92482 2aefA 234 86.18 1vl8A 267 86.51 c.2.1.2 108733 1z82A 335 87.65 2yxeA 215 87.67 2axqA 467 88.52 1g0oA 283 89.58 c.2.1.2 60181 1i36A 264 89.92 a.100.1.8,c.2.1.6 71108,71109