# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1wwkA 307 1.209 2nacA 393 1.234 c.2.1.4,c.23.12.1 30088,31348 2vojA 371 1.307 2vhxA 377 1.316 2g76A 335 1.449 1gdhA 320 1.461 c.2.1.4,c.23.12.1 30095,31355 1pjcA 361 1.562 c.2.1.4,c.23.12.2 30101,31361 2gcgA 330 1.574 1b0aA 288 1.678 c.2.1.7,c.58.1.2 30286,33934 2cukA 311 1.701 2fssA 365 1.777 2dbqA 334 1.999 1v8bA 479 2.058 c.2.1.4,c.23.12.3 113564,113565 1li4A 432 2.115 c.2.1.4,c.23.12.3 84616,84617 1a4iA 301 2.199 c.2.1.7,c.58.1.2 30278,33926 2o4cA 380 2.247 2eklA 313 2.324 1mx3A 347 2.346 c.2.1.4,c.23.12.1 79638,79639 1ygyA 529 2.549 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1dxy 333 2.554 1x13A 401 2.554 2j6iA 364 2.639 1dxyA 333 2.648 c.2.1.4,c.23.12.1 30094,31354 2c2xA 281 2.825 1qp8A 303 2.938 c.2.1.4,c.23.12.1 30092,31352 1xdwA 331 2.941 2d0iA 333 3.115 2pi1A 334 3.158 1sc6A 404 3.203 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1j4aA 333 3.341 c.2.1.4,c.23.12.1 71502,71503 1l7dA 384 3.630 c.2.1.4,c.23.12.2 77774,77775 1lluA 342 4.833 b.35.1.2,c.2.1.1 91064,91065 1yqdA 366 5.186 1edzA 320 5.597 c.2.1.7,c.58.1.2 30287,33935 1f8fA 371 5.604 b.35.1.2,c.2.1.1 83246,83247 1vj0A 380 5.761 b.35.1.2,c.2.1.1 100786,100787 2qrlA 394 5.840 2dm6A 333 5.944 b.35.1.2,c.2.1.1 131567,131568 2d8aA 348 5.998 1yb5A 351 6.020 b.35.1.2,c.2.1.1 116601,116602 1iz0A 302 6.087 b.35.1.2,c.2.1.1 83821,83822 1h2bA 359 6.227 b.35.1.2,c.2.1.1 90543,90544 1qorA 327 6.406 b.35.1.2,c.2.1.1 24766,29782 1y9aA 360 6.545 1kolA 398 6.605 b.35.1.2,c.2.1.1 77474,77475 1tt7A 330 6.608 b.35.1.2,c.2.1.1 112623,112624 1gpjA 404 6.688 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2ouiA 360 6.695 1wlyA 333 6.893 2hcyA 347 6.938 2jhfA 374 7.071 b.35.1.2,c.2.1.1 138314,138315 1zsyA 357 7.174 1u3wA 374 7.246 b.35.1.2,c.2.1.1 113013,113014 1n8kA 374 7.579 b.35.1.2,c.2.1.1 80298,80299 2cf5A 357 7.635 2eihA 343 7.716 1p0fA 373 8.089 b.35.1.2,c.2.1.1 87642,87643 1jvbA 347 8.726 b.35.1.2,c.2.1.1 77181,77182 1lehA 364 8.892 c.2.1.7,c.58.1.1 30268,33916 1pl8A 356 9.000 b.35.1.2,c.2.1.1 94878,94879 2h6eA 344 9.200 1gu7A 364 9.564 b.35.1.2,c.2.1.1 83321,83322 1uufA 369 9.678 b.35.1.2,c.2.1.1 100006,100007 1o89A 345 10.26 b.35.1.2,c.2.1.1 92644,92645 1vj1A 363 11.23 b.35.1.2,c.2.1.1 100794,100795 2b5wA 357 11.34 2cdcA 366 11.40 1c1dA 355 11.57 c.2.1.7,c.58.1.1 30270,33918 2j3hA 345 13.18 2eggA 297 16.02 2nloA 302 17.18 2hk9A 275 18.38 1nytA 271 18.41 c.2.1.7,c.58.1.5 86417,86418 1omoA 322 22.26 c.2.1.13 104017 1bgvA 449 22.81 c.2.1.7,c.58.1.1 30217,33865 1x7dA 350 23.14 c.2.1.13 114927 1hwxA 501 24.27 c.2.1.7,c.58.1.1 30250,33898 2d5cA 263 24.73 1b26A 416 25.39 c.2.1.7,c.58.1.1 30232,33880 1luaA 287 26.93 c.2.1.7,c.58.1.4 78216,78217 1b3bA 415 27.22 c.2.1.7,c.58.1.1 30244,33892 1p77A 272 27.29 c.2.1.7,c.58.1.5 94214,94215 2dvmA 439 31.32 1npyA 271 34.23 c.2.1.7,c.58.1.5 85995,85996 2o7sA 523 34.50 2ahrA 259 34.53 a.100.1.10,c.2.1.6 126775,126776 1gtmA 419 35.92 c.2.1.7,c.58.1.1 30223,33871 1vpdA 299 35.98 a.100.1.1,c.2.1.6 113951,113952 1nvtA 287 35.99 c.2.1.7,c.58.1.5 86270,86271 1vi2A 300 36.10 c.2.1.7,c.58.1.5 100726,100727 2bmaA 470 37.47 2h78A 302 38.26 1yb4A 295 40.46 1yrlA 491 40.71 1ks9A 291 48.94 a.100.1.7,c.2.1.6 68857,68858 3c24A 286 49.06 1np3A 338 50.39 a.100.1.2,c.2.1.6 85946,85947 2izzA 322 56.23 1yqgA 263 57.53 2f1kA 279 58.31 a.100.1.12,c.2.1.6 132772,132773 1qmgA 524 58.35 a.100.1.2,c.2.1.6 18785,30182 2pv7A 298 59.19 2dpoA 319 60.47 2g5cA 281 63.67 a.100.1.12,c.2.1.6 134646,134647 1lssA 140 64.66 c.2.1.9 74246 2gptA 523 66.35 1bg6A 359 68.01 a.100.1.5,c.2.1.6 18810,30214 1f0yA 302 68.68 a.100.1.3,c.2.1.6 18793,30197 1jg1A 235 71.70 c.66.1.7 66661 2ew2A 316 72.95 1jayA 212 73.72 c.2.1.6 66478 2hmvA 144 73.99 c.2.1.9 136615 2graA 277 74.32 2v3aA 384 79.03 1bg6 359 80.32 3c85A 183 81.29 1dl5A 317 85.18 c.66.1.7,d.197.1.1 64720,64721 1yb1A 272 87.50 c.2.1.2 116599 2gasA 307 87.81 2bkaA 242 87.86 c.2.1.2 128666 1nhpA 447 89.13 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1lvlA 458 89.34 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1hyuA 521 89.55 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1xgkA 352 89.98 c.2.1.2 115286