# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2vhxA 377 0.3977 2nacA 393 0.4901 c.2.1.4,c.23.12.1 30088,31348 1wwkA 307 0.5376 2vojA 371 0.5500 2g76A 335 0.6530 1gdhA 320 0.6543 c.2.1.4,c.23.12.1 30095,31355 2gcgA 330 0.7131 2fssA 365 0.7273 2j6iA 364 0.7707 1pjcA 361 0.7731 c.2.1.4,c.23.12.2 30101,31361 1v8bA 479 0.7795 c.2.1.4,c.23.12.3 113564,113565 2cukA 311 0.7836 1b0aA 288 0.7839 c.2.1.7,c.58.1.2 30286,33934 2dbqA 334 0.7851 1mx3A 347 0.8853 c.2.1.4,c.23.12.1 79638,79639 1a4iA 301 0.8911 c.2.1.7,c.58.1.2 30278,33926 1ygyA 529 0.9153 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2d0iA 333 0.999 1li4A 432 1.047 c.2.1.4,c.23.12.3 84616,84617 2o4cA 380 1.048 2eklA 313 1.101 1xdwA 331 1.111 1sc6A 404 1.210 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1dxy 333 1.211 2pi1A 334 1.223 1dxyA 333 1.238 c.2.1.4,c.23.12.1 30094,31354 1x13A 401 1.240 1qp8A 303 1.339 c.2.1.4,c.23.12.1 30092,31352 1j4aA 333 1.429 c.2.1.4,c.23.12.1 71502,71503 2c2xA 281 1.602 1l7dA 384 1.767 c.2.1.4,c.23.12.2 77774,77775 1vj0A 380 2.317 b.35.1.2,c.2.1.1 100786,100787 1edzA 320 2.402 c.2.1.7,c.58.1.2 30287,33935 1yqdA 366 2.430 2cf5A 357 2.554 1pl8A 356 2.693 b.35.1.2,c.2.1.1 94878,94879 1lluA 342 2.704 b.35.1.2,c.2.1.1 91064,91065 1f8fA 371 2.859 b.35.1.2,c.2.1.1 83246,83247 2ouiA 360 3.025 2hcyA 347 3.208 1y9aA 360 3.213 1uufA 369 3.258 b.35.1.2,c.2.1.1 100006,100007 1kolA 398 3.403 b.35.1.2,c.2.1.1 77474,77475 2qrlA 394 3.450 2d8aA 348 3.547 1gpjA 404 3.593 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1h2bA 359 3.629 b.35.1.2,c.2.1.1 90543,90544 2jhfA 374 3.654 b.35.1.2,c.2.1.1 138314,138315 2eihA 343 3.670 1yb5A 351 3.693 b.35.1.2,c.2.1.1 116601,116602 1p0fA 373 3.709 b.35.1.2,c.2.1.1 87642,87643 1qorA 327 3.767 b.35.1.2,c.2.1.1 24766,29782 1iz0A 302 3.990 b.35.1.2,c.2.1.1 83821,83822 1n8kA 374 4.027 b.35.1.2,c.2.1.1 80298,80299 1u3wA 374 4.097 b.35.1.2,c.2.1.1 113013,113014 2h6eA 344 4.101 1tt7A 330 4.463 b.35.1.2,c.2.1.1 112623,112624 1jvbA 347 4.500 b.35.1.2,c.2.1.1 77181,77182 2cdcA 366 4.746 1zsyA 357 4.772 1wlyA 333 4.780 2dm6A 333 5.140 b.35.1.2,c.2.1.1 131567,131568 2b5wA 357 6.076 1lehA 364 6.560 c.2.1.7,c.58.1.1 30268,33916 2j3hA 345 6.584 1vj1A 363 6.914 b.35.1.2,c.2.1.1 100794,100795 1gu7A 364 7.024 b.35.1.2,c.2.1.1 83321,83322 1o89A 345 7.392 b.35.1.2,c.2.1.1 92644,92645 1c1dA 355 7.895 c.2.1.7,c.58.1.1 30270,33918 2eggA 297 10.67 2hk9A 275 11.16 2nloA 302 12.06 1x7dA 350 12.21 c.2.1.13 114927 1nytA 271 12.37 c.2.1.7,c.58.1.5 86417,86418 1b26A 416 15.29 c.2.1.7,c.58.1.1 30232,33880 1bgvA 449 15.56 c.2.1.7,c.58.1.1 30217,33865 1omoA 322 15.59 c.2.1.13 104017 1b3bA 415 16.25 c.2.1.7,c.58.1.1 30244,33892 2d5cA 263 16.59 1luaA 287 17.07 c.2.1.7,c.58.1.4 78216,78217 1p77A 272 18.57 c.2.1.7,c.58.1.5 94214,94215 2dvmA 439 21.55 1nvtA 287 21.91 c.2.1.7,c.58.1.5 86270,86271 1gtmA 419 22.19 c.2.1.7,c.58.1.1 30223,33871 1vi2A 300 22.40 c.2.1.7,c.58.1.5 100726,100727 2bmaA 470 22.82 1hwxA 501 22.84 c.2.1.7,c.58.1.1 30250,33898 1vpdA 299 23.92 a.100.1.1,c.2.1.6 113951,113952 1npyA 271 25.35 c.2.1.7,c.58.1.5 85995,85996 2ahrA 259 27.11 a.100.1.10,c.2.1.6 126775,126776 1bg6A 359 29.01 a.100.1.5,c.2.1.6 18810,30214 2o7sA 523 29.97 1yb4A 295 30.36 2h78A 302 30.64 1ks9A 291 32.04 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 32.67 2f1kA 279 33.51 a.100.1.12,c.2.1.6 132772,132773 2g5cA 281 34.24 a.100.1.12,c.2.1.6 134646,134647 2ew2A 316 34.61 3c24A 286 36.18 1bg6 359 36.32 1np3A 338 36.61 a.100.1.2,c.2.1.6 85946,85947 2izzA 322 41.85 1yqgA 263 46.53 2pv7A 298 46.63 1f0yA 302 49.12 a.100.1.3,c.2.1.6 18793,30197 2dpoA 319 50.63 1jayA 212 51.62 c.2.1.6 66478 1qmgA 524 53.34 a.100.1.2,c.2.1.6 18785,30182 2gptA 523 53.40 1qv9A 283 56.32 c.127.1.1 96356 1lssA 140 56.50 c.2.1.9 74246 2graA 277 57.08 2bkaA 242 59.38 c.2.1.2 128666 2hmvA 144 62.99 c.2.1.9 136615 2pgdA 482 64.00 a.100.1.1,c.2.1.6 18778,30190 2gdzA 267 64.12 c.2.1.2 135043 1jg1A 235 65.25 c.66.1.7 66661 2cvzA 289 65.27 a.100.1.1,c.2.1.6 130890,130891 1hdoA 206 67.23 c.2.1.2 60965 1evyA 366 68.93 a.100.1.6,c.2.1.6 18811,30215 1xu9A 286 70.87 c.2.1.2 116052 1hxhA 253 72.13 c.2.1.2 76725 2qytA 317 72.65 3c85A 183 74.00 2v3aA 384 74.25 1y1pA 342 74.66 c.2.1.2 122550 1yb1A 272 75.42 c.2.1.2 116599 1ff9A 450 76.43 c.2.1.3,d.81.1.2 30039,39954 1ydeA 270 76.59 c.2.1.2 122980 2exxA 306 76.63 1id1A 153 77.20 c.2.1.9 62286 2p4qA 497 77.68 1sb8A 352 78.26 c.2.1.2 105410 2i76A 276 78.27 2gasA 307 78.58 1lsuA 147 79.32 c.2.1.9 74250 1kpgA 287 79.89 c.66.1.18 68735 2bllA 345 80.69 c.2.1.2 128733 2o23A 265 81.04 c.2.1.2 138884 1ml4A 308 81.54 c.78.1.1,c.78.1.1 79255,79256 2aefA 234 81.75 1e6wA 260 81.92 c.2.1.2 59326 1dl5A 317 82.70 c.66.1.7,d.197.1.1 64720,64721 2r6jA 318 82.71 2gn4A 344 82.89 1z82A 335 83.05 2nm0A 253 83.44 1yxmA 303 83.79 c.2.1.2 124192 2axqA 467 84.93 2a4kA 263 85.23 c.2.1.2 126156 1nffA 260 85.41 c.2.1.2 80457 1o54A 277 85.87 c.66.1.13 92482 1xtpA 254 86.50 c.66.1.42 116031 1xgkA 352 86.72 c.2.1.2 115286 1x0vA 354 86.86 1hyuA 521 87.63 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1vl8A 267 87.65 c.2.1.2 108733 2rcyA 262 88.04 2yxeA 215 89.02 2pgd 482 89.23