# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nacA 393 0.3255 c.2.1.4,c.23.12.1 30088,31348 2vhxA 377 0.3271 1wwkA 307 0.3718 1gdhA 320 0.4044 c.2.1.4,c.23.12.1 30095,31355 2g76A 335 0.4294 2vojA 371 0.4420 1pjcA 361 0.4651 c.2.1.4,c.23.12.2 30101,31361 2gcgA 330 0.4653 2j6iA 364 0.4701 1b0aA 288 0.4727 c.2.1.7,c.58.1.2 30286,33934 2fssA 365 0.4796 2eklA 313 0.4840 2cukA 311 0.5073 2dbqA 334 0.5269 1v8bA 479 0.5505 c.2.1.4,c.23.12.3 113564,113565 1a4iA 301 0.5720 c.2.1.7,c.58.1.2 30278,33926 2d0iA 333 0.6373 1mx3A 347 0.6590 c.2.1.4,c.23.12.1 79638,79639 1li4A 432 0.6619 c.2.1.4,c.23.12.3 84616,84617 2o4cA 380 0.7036 1ygyA 529 0.7279 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2pi1A 334 0.8260 1xdwA 331 0.8355 1sc6A 404 0.8358 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1dxyA 333 0.8755 c.2.1.4,c.23.12.1 30094,31354 1x13A 401 0.8826 1dxy 333 0.8853 1qp8A 303 0.9201 c.2.1.4,c.23.12.1 30092,31352 2c2xA 281 0.9227 1j4aA 333 1.144 c.2.1.4,c.23.12.1 71502,71503 1l7dA 384 1.219 c.2.1.4,c.23.12.2 77774,77775 1edzA 320 1.446 c.2.1.7,c.58.1.2 30287,33935 1yqdA 366 1.460 2cf5A 357 1.536 1vj0A 380 1.543 b.35.1.2,c.2.1.1 100786,100787 1f8fA 371 1.837 b.35.1.2,c.2.1.1 83246,83247 1lluA 342 1.868 b.35.1.2,c.2.1.1 91064,91065 1uufA 369 1.913 b.35.1.2,c.2.1.1 100006,100007 2qrlA 394 2.022 2hcyA 347 2.032 2ouiA 360 2.088 1y9aA 360 2.115 1pl8A 356 2.128 b.35.1.2,c.2.1.1 94878,94879 1h2bA 359 2.315 b.35.1.2,c.2.1.1 90543,90544 1p0fA 373 2.322 b.35.1.2,c.2.1.1 87642,87643 1gpjA 404 2.327 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2jhfA 374 2.477 b.35.1.2,c.2.1.1 138314,138315 1kolA 398 2.520 b.35.1.2,c.2.1.1 77474,77475 1qorA 327 2.523 b.35.1.2,c.2.1.1 24766,29782 1yb5A 351 2.542 b.35.1.2,c.2.1.1 116601,116602 2d8aA 348 2.556 2eihA 343 2.583 1u3wA 374 2.593 b.35.1.2,c.2.1.1 113013,113014 1n8kA 374 2.612 b.35.1.2,c.2.1.1 80298,80299 1jvbA 347 2.788 b.35.1.2,c.2.1.1 77181,77182 1tt7A 330 2.825 b.35.1.2,c.2.1.1 112623,112624 1wlyA 333 2.942 2h6eA 344 3.374 1iz0A 302 3.447 b.35.1.2,c.2.1.1 83821,83822 2dm6A 333 3.481 b.35.1.2,c.2.1.1 131567,131568 1zsyA 357 3.609 2cdcA 366 3.712 2j3hA 345 3.839 1lehA 364 3.982 c.2.1.7,c.58.1.1 30268,33916 2b5wA 357 4.158 1o89A 345 4.205 b.35.1.2,c.2.1.1 92644,92645 1gu7A 364 4.395 b.35.1.2,c.2.1.1 83321,83322 1vj1A 363 5.252 b.35.1.2,c.2.1.1 100794,100795 1c1dA 355 6.806 c.2.1.7,c.58.1.1 30270,33918 2eggA 297 7.956 1b26A 416 8.582 c.2.1.7,c.58.1.1 30232,33880 1bgvA 449 8.608 c.2.1.7,c.58.1.1 30217,33865 2hk9A 275 8.610 1b3bA 415 9.311 c.2.1.7,c.58.1.1 30244,33892 1nytA 271 9.669 c.2.1.7,c.58.1.5 86417,86418 1x7dA 350 10.77 c.2.1.13 114927 2nloA 302 10.97 2bmaA 470 12.42 1luaA 287 12.51 c.2.1.7,c.58.1.4 78216,78217 1omoA 322 12.94 c.2.1.13 104017 1gtmA 419 13.76 c.2.1.7,c.58.1.1 30223,33871 2dvmA 439 15.36 2d5cA 263 15.52 1hwxA 501 15.84 c.2.1.7,c.58.1.1 30250,33898 1p77A 272 16.39 c.2.1.7,c.58.1.5 94214,94215 1nvtA 287 17.97 c.2.1.7,c.58.1.5 86270,86271 2ahrA 259 21.93 a.100.1.10,c.2.1.6 126775,126776 1vi2A 300 22.83 c.2.1.7,c.58.1.5 100726,100727 2o7sA 523 23.05 1npyA 271 24.19 c.2.1.7,c.58.1.5 85995,85996 1ks9A 291 25.91 a.100.1.7,c.2.1.6 68857,68858 1bg6A 359 28.25 a.100.1.5,c.2.1.6 18810,30214 2g5cA 281 28.91 a.100.1.12,c.2.1.6 134646,134647 1np3A 338 30.19 a.100.1.2,c.2.1.6 85946,85947 3c24A 286 31.29 1yrlA 491 32.64 1qv9A 283 34.15 c.127.1.1 96356 1bg6 359 34.57 1vpdA 299 34.72 a.100.1.1,c.2.1.6 113951,113952 2f1kA 279 35.58 a.100.1.12,c.2.1.6 132772,132773 1yqgA 263 35.85 2gptA 523 36.56 2izzA 322 38.46 2h78A 302 38.82 1f0yA 302 43.72 a.100.1.3,c.2.1.6 18793,30197 2graA 277 44.12 1yb4A 295 45.57 2dpoA 319 45.67 1qmgA 524 46.34 a.100.1.2,c.2.1.6 18785,30182 2pv7A 298 47.72 2ew2A 316 49.67 1lssA 140 51.96 c.2.1.9 74246 2bkaA 242 52.38 c.2.1.2 128666 2i76A 276 52.51 1jg1A 235 53.03 c.66.1.7 66661 1hxhA 253 53.77 c.2.1.2 76725 1jayA 212 54.24 c.2.1.6 66478 2hmvA 144 54.47 c.2.1.9 136615 1lsuA 147 56.59 c.2.1.9 74250 2o23A 265 56.67 c.2.1.2 138884 1hdoA 206 57.22 c.2.1.2 60965 1e6wA 260 57.89 c.2.1.2 59326 3c85A 183 57.90 1yb1A 272 59.31 c.2.1.2 116599 1evyA 366 60.05 a.100.1.6,c.2.1.6 18811,30215 1yxmA 303 63.38 c.2.1.2 124192 2gdzA 267 63.62 c.2.1.2 135043 1nffA 260 63.82 c.2.1.2 80457 1kpgA 287 63.87 c.66.1.18 68735 1xtpA 254 64.90 c.66.1.42 116031 1id1A 153 65.76 c.2.1.9 62286 1q1rA 431 66.08 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1y1pA 342 66.76 c.2.1.2 122550 2bllA 345 66.91 c.2.1.2 128733 1ydeA 270 67.31 c.2.1.2 122980 1kyqA 274 68.28 c.2.1.11,e.37.1.1 73281,73282 2nm0A 253 68.86 2pzmA 330 68.88 2v3aA 384 69.15 2cduA 452 69.40 1k2wA 256 69.82 c.2.1.2 90927 2g1uA 155 70.30 2exxA 306 70.59 2c07A 285 71.02 c.2.1.2 129577 2a4kA 263 71.51 c.2.1.2 126156 1fl2A 310 72.02 c.3.1.5,c.3.1.5 59869,59870 2qytA 317 72.41 1o54A 277 73.86 c.66.1.13 92482 1hyuA 521 74.03 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1zemA 262 74.60 c.2.1.2 124984 1vl8A 267 74.91 c.2.1.2 108733 2yxeA 215 75.94 2r6jA 318 76.36 1fmcA 255 76.48 c.2.1.2 29856 1sb8A 352 76.64 c.2.1.2 105410 2z5lA 511 76.68 2ae2A 260 76.70 c.2.1.2 29945 1qamA 244 76.92 c.66.1.24 34220 1bdbA 277 76.96 c.2.1.2 29874 1ff9A 450 78.18 c.2.1.3,d.81.1.2 30039,39954 2ag5A 246 78.54 c.2.1.2 126719 1xu9A 286 78.69 c.2.1.2 116052 1i1nA 226 79.57 c.66.1.7 71102 2bgkA 278 79.62 c.2.1.2 128480 2jahA 247 79.85 1ml4A 308 80.04 c.78.1.1,c.78.1.1 79255,79256 2dknA 255 80.29 2cvzA 289 80.29 a.100.1.1,c.2.1.6 130890,130891 2gn4A 344 80.77 1x0vA 354 80.90 1cydA 244 80.91 c.2.1.2 29825 2rcyA 262 80.97 1hdcA 253 81.07 c.2.1.2 29862 2p91A 285 81.92 2c29D 337 82.35 2o57A 297 82.65 1spxA 278 83.66 c.2.1.2 98958 1w6uA 302 83.67 c.2.1.2 114288 1bdb 277 84.11 2z1nA 260 84.91 1xdzA 240 84.92 c.66.1.20 115196 1dl5A 317 85.12 c.66.1.7,d.197.1.1 64720,64721 1iy8A 267 85.42 c.2.1.2 83774 1nhpA 447 86.66 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1wvgA 359 88.74 c.2.1.2 121339 2cfcA 250 89.32 1zcjA 463 89.36 2d1yA 256 89.38 c.2.1.2 131151