# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nacA 393 0.2067 c.2.1.4,c.23.12.1 30088,31348 2vhxA 377 0.2135 1wwkA 307 0.2498 2vojA 371 0.2668 1gdhA 320 0.2906 c.2.1.4,c.23.12.1 30095,31355 2g76A 335 0.2922 1b0aA 288 0.3110 c.2.1.7,c.58.1.2 30286,33934 2fssA 365 0.3137 2gcgA 330 0.3211 2j6iA 364 0.3339 1pjcA 361 0.3442 c.2.1.4,c.23.12.2 30101,31361 1v8bA 479 0.3465 c.2.1.4,c.23.12.3 113564,113565 2eklA 313 0.3516 2cukA 311 0.3741 1a4iA 301 0.3752 c.2.1.7,c.58.1.2 30278,33926 2dbqA 334 0.3803 2d0iA 333 0.4384 1mx3A 347 0.4452 c.2.1.4,c.23.12.1 79638,79639 1ygyA 529 0.4518 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2o4cA 380 0.4754 1li4A 432 0.4784 c.2.1.4,c.23.12.3 84616,84617 2pi1A 334 0.5872 1sc6A 404 0.5931 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1xdwA 331 0.6116 2c2xA 281 0.6142 1dxy 333 0.6325 1x13A 401 0.6486 1dxyA 333 0.6642 c.2.1.4,c.23.12.1 30094,31354 1qp8A 303 0.7635 c.2.1.4,c.23.12.1 30092,31352 1j4aA 333 0.7852 c.2.1.4,c.23.12.1 71502,71503 1l7dA 384 0.8745 c.2.1.4,c.23.12.2 77774,77775 1yqdA 366 1.040 1vj0A 380 1.076 b.35.1.2,c.2.1.1 100786,100787 2cf5A 357 1.127 1edzA 320 1.151 c.2.1.7,c.58.1.2 30287,33935 1lluA 342 1.262 b.35.1.2,c.2.1.1 91064,91065 1f8fA 371 1.308 b.35.1.2,c.2.1.1 83246,83247 2ouiA 360 1.314 1uufA 369 1.346 b.35.1.2,c.2.1.1 100006,100007 1pl8A 356 1.361 b.35.1.2,c.2.1.1 94878,94879 1y9aA 360 1.361 2hcyA 347 1.390 1p0fA 373 1.659 b.35.1.2,c.2.1.1 87642,87643 1kolA 398 1.692 b.35.1.2,c.2.1.1 77474,77475 2jhfA 374 1.721 b.35.1.2,c.2.1.1 138314,138315 2d8aA 348 1.759 1h2bA 359 1.780 b.35.1.2,c.2.1.1 90543,90544 1yb5A 351 1.784 b.35.1.2,c.2.1.1 116601,116602 2qrlA 394 1.851 1u3wA 374 1.860 b.35.1.2,c.2.1.1 113013,113014 1qorA 327 1.878 b.35.1.2,c.2.1.1 24766,29782 2eihA 343 1.904 1gpjA 404 1.907 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1n8kA 374 1.907 b.35.1.2,c.2.1.1 80298,80299 1tt7A 330 2.044 b.35.1.2,c.2.1.1 112623,112624 1jvbA 347 2.074 b.35.1.2,c.2.1.1 77181,77182 1wlyA 333 2.163 2h6eA 344 2.201 1zsyA 357 2.255 1iz0A 302 2.385 b.35.1.2,c.2.1.1 83821,83822 2cdcA 366 2.505 2dm6A 333 2.542 b.35.1.2,c.2.1.1 131567,131568 1lehA 364 2.849 c.2.1.7,c.58.1.1 30268,33916 2j3hA 345 2.975 1o89A 345 3.300 b.35.1.2,c.2.1.1 92644,92645 2b5wA 357 3.404 1gu7A 364 3.487 b.35.1.2,c.2.1.1 83321,83322 1vj1A 363 3.793 b.35.1.2,c.2.1.1 100794,100795 1c1dA 355 4.906 c.2.1.7,c.58.1.1 30270,33918 2eggA 297 6.801 2hk9A 275 7.142 1x7dA 350 7.574 c.2.1.13 114927 1bgvA 449 8.259 c.2.1.7,c.58.1.1 30217,33865 1b26A 416 8.294 c.2.1.7,c.58.1.1 30232,33880 1nytA 271 8.319 c.2.1.7,c.58.1.5 86417,86418 1b3bA 415 8.863 c.2.1.7,c.58.1.1 30244,33892 1omoA 322 9.087 c.2.1.13 104017 2nloA 302 9.442 1luaA 287 10.76 c.2.1.7,c.58.1.4 78216,78217 2d5cA 263 11.60 2bmaA 470 11.89 2dvmA 439 12.06 1p77A 272 12.80 c.2.1.7,c.58.1.5 94214,94215 1gtmA 419 13.56 c.2.1.7,c.58.1.1 30223,33871 1vi2A 300 15.22 c.2.1.7,c.58.1.5 100726,100727 1nvtA 287 16.20 c.2.1.7,c.58.1.5 86270,86271 1hwxA 501 16.75 c.2.1.7,c.58.1.1 30250,33898 2ahrA 259 17.04 a.100.1.10,c.2.1.6 126775,126776 1npyA 271 19.17 c.2.1.7,c.58.1.5 85995,85996 1bg6A 359 19.19 a.100.1.5,c.2.1.6 18810,30214 2o7sA 523 19.67 2f1kA 279 21.57 a.100.1.12,c.2.1.6 132772,132773 1ks9A 291 21.59 a.100.1.7,c.2.1.6 68857,68858 2g5cA 281 22.06 a.100.1.12,c.2.1.6 134646,134647 3c24A 286 23.05 1bg6 359 23.08 1vpdA 299 24.34 a.100.1.1,c.2.1.6 113951,113952 1yrlA 491 24.57 1np3A 338 25.02 a.100.1.2,c.2.1.6 85946,85947 2h78A 302 27.90 1f0yA 302 30.86 a.100.1.3,c.2.1.6 18793,30197 1yb4A 295 32.55 2gptA 523 33.45 2dpoA 319 33.72 1yqgA 263 33.98 2pv7A 298 34.37 2izzA 322 34.57 1qv9A 283 35.52 c.127.1.1 96356 1qmgA 524 36.36 a.100.1.2,c.2.1.6 18785,30182 2ew2A 316 36.64 2graA 277 39.60 2bkaA 242 39.87 c.2.1.2 128666 1jg1A 235 41.87 c.66.1.7 66661 1jayA 212 42.82 c.2.1.6 66478 1evyA 366 43.42 a.100.1.6,c.2.1.6 18811,30215 1lssA 140 43.85 c.2.1.9 74246 2hmvA 144 44.15 c.2.1.9 136615 2a4kA 263 44.42 c.2.1.2 126156 1hdoA 206 44.89 c.2.1.2 60965 1lsuA 147 45.58 c.2.1.9 74250 1yb1A 272 47.28 c.2.1.2 116599 2exxA 306 47.52 2gdzA 267 47.74 c.2.1.2 135043 1hxhA 253 48.56 c.2.1.2 76725 1y1pA 342 48.66 c.2.1.2 122550 1e6wA 260 49.44 c.2.1.2 59326 2o23A 265 49.90 c.2.1.2 138884 1nffA 260 50.39 c.2.1.2 80457 1ff9A 450 51.84 c.2.1.3,d.81.1.2 30039,39954 3c85A 183 51.92 1yxmA 303 52.51 c.2.1.2 124192 2cvzA 289 53.42 a.100.1.1,c.2.1.6 130890,130891 1xu9A 286 54.67 c.2.1.2 116052 2v3aA 384 55.09 1vl8A 267 55.34 c.2.1.2 108733 1q1rA 431 55.51 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1kpgA 287 55.82 c.66.1.18 68735 1id1A 153 56.48 c.2.1.9 62286 1sb8A 352 56.63 c.2.1.2 105410 2i76A 276 57.00 1g0oA 283 57.02 c.2.1.2 60181 2r6jA 318 57.21 2gasA 307 57.53 1fmcA 255 58.23 c.2.1.2 29856 1ydeA 270 58.51 c.2.1.2 122980 1bdbA 277 58.73 c.2.1.2 29874 2axqA 467 59.01 2cduA 452 59.19 2bllA 345 59.20 c.2.1.2 128733 1zemA 262 59.27 c.2.1.2 124984 2g1uA 155 59.43 1k2wA 256 59.65 c.2.1.2 90927 2gn4A 344 60.63 2ae2A 260 61.28 c.2.1.2 29945 2jahA 247 62.42 2bgkA 278 62.97 c.2.1.2 128480 1hdcA 253 63.00 c.2.1.2 29862 1dl5A 317 63.08 c.66.1.7,d.197.1.1 64720,64721 2aefA 234 63.36 2pzmA 330 63.39 2qytA 317 63.63 1bdb 277 64.43 1zcjA 463 65.04 1hyuA 521 65.37 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2yxeA 215 65.68 1kyqA 274 65.84 c.2.1.11,e.37.1.1 73281,73282 2ag5A 246 66.33 c.2.1.2 126719 1nhsA 447 67.38 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2c07A 285 67.39 c.2.1.2 129577 1h5qA 265 67.68 c.2.1.2 60643 1i1nA 226 68.33 c.66.1.7 71102 1spxA 278 68.44 c.2.1.2 98958 1wvgA 359 68.72 c.2.1.2 121339 1fl2A 310 69.03 c.3.1.5,c.3.1.5 59869,59870 2z5lA 511 69.34 2nm0A 253 69.60 1cydA 244 70.22 c.2.1.2 29825 1w6uA 302 70.41 c.2.1.2 114288 1y5mA 276 70.47 c.2.1.2 122645 1o54A 277 71.06 c.66.1.13 92482 1ja9A 274 71.43 c.2.1.2 62817 2pgd 482 71.49 1txgA 335 71.58 a.100.1.6,c.2.1.6 112775,112776 2p91A 285 71.93 1iy8A 267 72.03 c.2.1.2 83774 1nhpA 447 72.06 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2pnfA 248 72.20 1xgkA 352 72.61 c.2.1.2 115286 1xg5A 279 72.92 c.2.1.2 115277 2c29D 337 72.95 1ml4A 308 73.02 c.78.1.1,c.78.1.1 79255,79256 2d1yA 256 73.18 c.2.1.2 131151 2qq5A 260 73.34 2rcyA 262 74.09 2z1nA 260 74.81 2pgdA 482 75.18 a.100.1.1,c.2.1.6 18778,30190 2h7mA 269 75.64 c.2.1.2 136219 1rkxA 357 75.66 c.2.1.2 97631 1l1eA 287 76.91 c.66.1.18 73454 1xtpA 254 77.59 c.66.1.42 116031 2o57A 297 77.90 2cfcA 250 78.22 2dknA 255 78.33 1uluA 261 79.12 c.2.1.2 113292 1z82A 335 79.41 1qamA 244 79.51 c.66.1.24 34220 1xdzA 240 80.01 c.66.1.20 115196 1zbqA 327 80.61 c.2.1.2 124862 2r9zA 463 80.85 1mv8A 436 80.94 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2gqwA 408 81.50 2ew8A 249 83.23 c.2.1.2 132447 1lvlA 458 83.38 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1eny 268 83.77 2nxcA 254 83.88 c.66.1.39 138739 3ladA 476 84.41 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1x0vA 354 84.59 2pd6A 264 84.85 1gegA 256 85.80 c.2.1.2 29888 2fcaA 213 86.46 c.66.1.53 133262 1yqzA 438 86.73 1zk4A 251 86.93 c.2.1.2 125176 1qsgA 265 87.76 c.2.1.2 29935 1uzmA 247 88.94 c.2.1.2 119811 1dljA 402 89.14 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 3c3yA 237 89.16 2dtxA 264 89.60 1x7gA 261 89.91 c.2.1.2 114929