# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2vhxA 377 0.3306 2nacA 393 0.3361 c.2.1.4,c.23.12.1 30088,31348 1wwkA 307 0.3903 2vojA 371 0.4296 1gdhA 320 0.4514 c.2.1.4,c.23.12.1 30095,31355 2fssA 365 0.4780 1b0aA 288 0.4812 c.2.1.7,c.58.1.2 30286,33934 2g76A 335 0.4878 2j6iA 364 0.5176 1v8bA 479 0.5221 c.2.1.4,c.23.12.3 113564,113565 2gcgA 330 0.5229 2eklA 313 0.5324 1pjcA 361 0.5360 c.2.1.4,c.23.12.2 30101,31361 2cukA 311 0.5604 2dbqA 334 0.5747 1a4iA 301 0.5916 c.2.1.7,c.58.1.2 30278,33926 1mx3A 347 0.6530 c.2.1.4,c.23.12.1 79638,79639 2d0iA 333 0.6594 1ygyA 529 0.6687 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2o4cA 380 0.7097 1li4A 432 0.7134 c.2.1.4,c.23.12.3 84616,84617 1xdwA 331 0.8312 1sc6A 404 0.8528 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2pi1A 334 0.8690 1dxy 333 0.9016 1dxyA 333 0.9316 c.2.1.4,c.23.12.1 30094,31354 1qp8A 303 0.9333 c.2.1.4,c.23.12.1 30092,31352 2c2xA 281 0.9573 1x13A 401 0.9759 1j4aA 333 1.088 c.2.1.4,c.23.12.1 71502,71503 1l7dA 384 1.334 c.2.1.4,c.23.12.2 77774,77775 1edzA 320 1.608 c.2.1.7,c.58.1.2 30287,33935 1vj0A 380 1.671 b.35.1.2,c.2.1.1 100786,100787 1yqdA 366 1.693 2cf5A 357 1.824 1lluA 342 2.007 b.35.1.2,c.2.1.1 91064,91065 1f8fA 371 2.062 b.35.1.2,c.2.1.1 83246,83247 2ouiA 360 2.081 1y9aA 360 2.104 1pl8A 356 2.194 b.35.1.2,c.2.1.1 94878,94879 1uufA 369 2.203 b.35.1.2,c.2.1.1 100006,100007 2hcyA 347 2.319 1p0fA 373 2.527 b.35.1.2,c.2.1.1 87642,87643 2d8aA 348 2.532 2eihA 343 2.565 2qrlA 394 2.568 1qorA 327 2.622 b.35.1.2,c.2.1.1 24766,29782 1yb5A 351 2.667 b.35.1.2,c.2.1.1 116601,116602 1gpjA 404 2.701 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1kolA 398 2.708 b.35.1.2,c.2.1.1 77474,77475 2jhfA 374 2.712 b.35.1.2,c.2.1.1 138314,138315 1h2bA 359 2.815 b.35.1.2,c.2.1.1 90543,90544 1u3wA 374 2.843 b.35.1.2,c.2.1.1 113013,113014 1tt7A 330 2.892 b.35.1.2,c.2.1.1 112623,112624 1n8kA 374 3.017 b.35.1.2,c.2.1.1 80298,80299 2h6eA 344 3.088 1wlyA 333 3.101 1iz0A 302 3.128 b.35.1.2,c.2.1.1 83821,83822 1zsyA 357 3.237 1jvbA 347 3.271 b.35.1.2,c.2.1.1 77181,77182 2dm6A 333 3.552 b.35.1.2,c.2.1.1 131567,131568 2cdcA 366 3.903 2j3hA 345 3.998 1lehA 364 4.176 c.2.1.7,c.58.1.1 30268,33916 1o89A 345 4.381 b.35.1.2,c.2.1.1 92644,92645 1gu7A 364 4.741 b.35.1.2,c.2.1.1 83321,83322 2b5wA 357 4.775 1vj1A 363 5.022 b.35.1.2,c.2.1.1 100794,100795 1c1dA 355 6.354 c.2.1.7,c.58.1.1 30270,33918 2hk9A 275 7.744 2eggA 297 7.850 1x7dA 350 9.056 c.2.1.13 114927 1nytA 271 10.06 c.2.1.7,c.58.1.5 86417,86418 1b26A 416 10.41 c.2.1.7,c.58.1.1 30232,33880 1omoA 322 10.76 c.2.1.13 104017 1bgvA 449 10.97 c.2.1.7,c.58.1.1 30217,33865 2nloA 302 11.28 1b3bA 415 11.43 c.2.1.7,c.58.1.1 30244,33892 1luaA 287 13.21 c.2.1.7,c.58.1.4 78216,78217 2d5cA 263 14.67 2dvmA 439 14.89 1p77A 272 15.39 c.2.1.7,c.58.1.5 94214,94215 2bmaA 470 16.20 1gtmA 419 16.38 c.2.1.7,c.58.1.1 30223,33871 1vi2A 300 18.77 c.2.1.7,c.58.1.5 100726,100727 1nvtA 287 19.35 c.2.1.7,c.58.1.5 86270,86271 1hwxA 501 19.40 c.2.1.7,c.58.1.1 30250,33898 2ahrA 259 19.49 a.100.1.10,c.2.1.6 126775,126776 1npyA 271 23.63 c.2.1.7,c.58.1.5 85995,85996 3c24A 286 24.08 2o7sA 523 24.60 1bg6A 359 24.82 a.100.1.5,c.2.1.6 18810,30214 2f1kA 279 24.93 a.100.1.12,c.2.1.6 132772,132773 1vpdA 299 26.24 a.100.1.1,c.2.1.6 113951,113952 2g5cA 281 26.38 a.100.1.12,c.2.1.6 134646,134647 1np3A 338 27.30 a.100.1.2,c.2.1.6 85946,85947 1bg6 359 27.71 1ks9A 291 28.09 a.100.1.7,c.2.1.6 68857,68858 2h78A 302 28.61 1yrlA 491 29.85 2ew2A 316 35.89 1f0yA 302 37.30 a.100.1.3,c.2.1.6 18793,30197 2izzA 322 37.35 2pv7A 298 37.79 1yb4A 295 38.47 2dpoA 319 39.05 2gptA 523 40.29 1yqgA 263 40.89 1qmgA 524 41.53 a.100.1.2,c.2.1.6 18785,30182 1hdoA 206 41.75 c.2.1.2 60965 2graA 277 42.09 1lssA 140 45.70 c.2.1.9 74246 1qv9A 283 47.93 c.127.1.1 96356 1jayA 212 48.71 c.2.1.6 66478 2hmvA 144 52.56 c.2.1.9 136615 1evyA 366 54.05 a.100.1.6,c.2.1.6 18811,30215 2i76A 276 54.66 1lsuA 147 55.16 c.2.1.9 74250 2a4kA 263 55.51 c.2.1.2 126156 1yb1A 272 55.70 c.2.1.2 116599 2cvzA 289 56.26 a.100.1.1,c.2.1.6 130890,130891 1hxhA 253 56.68 c.2.1.2 76725 1q1rA 431 58.36 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2o23A 265 58.50 c.2.1.2 138884 1e6wA 260 59.47 c.2.1.2 59326 1jg1A 235 60.84 c.66.1.7 66661 2bkaA 242 60.86 c.2.1.2 128666 2gdzA 267 60.89 c.2.1.2 135043 1xu9A 286 61.33 c.2.1.2 116052 2exxA 306 61.38 2cduA 452 62.07 2v3aA 384 62.27 1y1pA 342 62.29 c.2.1.2 122550 1ff9A 450 63.69 c.2.1.3,d.81.1.2 30039,39954 1ydeA 270 64.96 c.2.1.2 122980 1id1A 153 66.18 c.2.1.9 62286 2g1uA 155 66.21 3c85A 183 66.67 1kpgA 287 66.79 c.66.1.18 68735 1nffA 260 68.23 c.2.1.2 80457 1sb8A 352 68.30 c.2.1.2 105410 1vl8A 267 68.49 c.2.1.2 108733 2aefA 234 68.78 1yxmA 303 68.92 c.2.1.2 124192 1k2wA 256 69.01 c.2.1.2 90927 1g0oA 283 69.42 c.2.1.2 60181 1bdbA 277 70.19 c.2.1.2 29874 1fmcA 255 72.04 c.2.1.2 29856 1zemA 262 72.29 c.2.1.2 124984 2qytA 317 72.35 2bllA 345 72.44 c.2.1.2 128733 2gn4A 344 72.75 1zcjA 463 73.21 2gasA 307 73.76 1fl2A 310 73.93 c.3.1.5,c.3.1.5 59869,59870 1kyqA 274 74.02 c.2.1.11,e.37.1.1 73281,73282 1nhpA 447 74.17 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1hyuA 521 75.27 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1txgA 335 75.65 a.100.1.6,c.2.1.6 112775,112776 2axqA 467 75.93 2z5lA 511 76.18 2gqwA 408 76.24 2jahA 247 76.51 2rcyA 262 77.18 1bdb 277 77.35 1nhsA 447 77.45 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1ml4A 308 77.93 c.78.1.1,c.78.1.1 79255,79256 2r6jA 318 78.00 2ag5A 246 78.24 c.2.1.2 126719 2ae2A 260 78.54 c.2.1.2 29945 2bgkA 278 79.06 c.2.1.2 128480 2c07A 285 79.58 c.2.1.2 129577 1z82A 335 80.23 2pgdA 482 80.33 a.100.1.1,c.2.1.6 18778,30190 2z1nA 260 81.12 1w6uA 302 81.13 c.2.1.2 114288 2nm0A 253 81.16 1wvgA 359 81.56 c.2.1.2 121339 1hdcA 253 82.09 c.2.1.2 29862 2o57A 297 82.68 1dl5A 317 82.91 c.66.1.7,d.197.1.1 64720,64721 2yxeA 215 83.51 1y5mA 276 83.56 c.2.1.2 122645 1spxA 278 84.03 c.2.1.2 98958 1iy8A 267 84.04 c.2.1.2 83774 1h5qA 265 84.12 c.2.1.2 60643 1xg5A 279 84.35 c.2.1.2 115277 1o54A 277 84.64 c.66.1.13 92482 1cydA 244 84.64 c.2.1.2 29825 1yqzA 438 84.77 2pzmA 330 85.33 2p4qA 497 85.87 2p91A 285 85.87 1xtpA 254 86.15 c.66.1.42 116031 2c29D 337 87.02 1rkxA 357 87.51 c.2.1.2 97631 2h7mA 269 88.62 c.2.1.2 136219 1xdzA 240 88.67 c.66.1.20 115196 1xgkA 352 88.78 c.2.1.2 115286 1ja9A 274 88.95 c.2.1.2 62817 2d1yA 256 89.17 c.2.1.2 131151 2pgd 482 89.57 2pnfA 248 89.99