# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2vhxA 377 1.442 2vojA 371 1.932 1pjcA 361 2.022 c.2.1.4,c.23.12.2 30101,31361 1wwkA 307 2.126 1gdhA 320 2.297 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 2.437 c.2.1.4,c.23.12.1 30088,31348 2g76A 335 2.616 2gcgA 330 2.664 2eklA 313 2.665 2fssA 365 2.699 2cukA 311 2.702 2dbqA 334 2.903 2j6iA 364 3.063 1b0aA 288 3.085 c.2.1.7,c.58.1.2 30286,33934 1a4iA 301 3.221 c.2.1.7,c.58.1.2 30278,33926 1mx3A 347 3.304 c.2.1.4,c.23.12.1 79638,79639 1v8bA 479 3.304 c.2.1.4,c.23.12.3 113564,113565 2d0iA 333 3.384 1xdwA 331 3.431 2o4cA 380 3.622 1dxy 333 3.716 1li4A 432 3.768 c.2.1.4,c.23.12.3 84616,84617 2pi1A 334 3.869 1dxyA 333 3.910 c.2.1.4,c.23.12.1 30094,31354 1x13A 401 3.997 1ygyA 529 4.106 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1j4aA 333 4.135 c.2.1.4,c.23.12.1 71502,71503 1l7dA 384 4.187 c.2.1.4,c.23.12.2 77774,77775 1qp8A 303 4.272 c.2.1.4,c.23.12.1 30092,31352 2c2xA 281 4.316 1sc6A 404 4.581 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1edzA 320 5.627 c.2.1.7,c.58.1.2 30287,33935 1yqdA 366 10.04 2cf5A 357 10.74 1gpjA 404 10.97 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1vj0A 380 11.10 b.35.1.2,c.2.1.1 100786,100787 1lluA 342 12.61 b.35.1.2,c.2.1.1 91064,91065 1f8fA 371 13.33 b.35.1.2,c.2.1.1 83246,83247 2hcyA 347 13.74 1tt7A 330 13.80 b.35.1.2,c.2.1.1 112623,112624 2ouiA 360 13.89 1uufA 369 14.51 b.35.1.2,c.2.1.1 100006,100007 1y9aA 360 14.62 2h6eA 344 14.65 1pl8A 356 14.66 b.35.1.2,c.2.1.1 94878,94879 2dm6A 333 15.05 b.35.1.2,c.2.1.1 131567,131568 1qorA 327 15.47 b.35.1.2,c.2.1.1 24766,29782 2eihA 343 15.52 2jhfA 374 15.83 b.35.1.2,c.2.1.1 138314,138315 1h2bA 359 15.91 b.35.1.2,c.2.1.1 90543,90544 2qrlA 394 15.94 1wlyA 333 16.86 1u3wA 374 17.22 b.35.1.2,c.2.1.1 113013,113014 2j3hA 345 17.25 1p0fA 373 17.47 b.35.1.2,c.2.1.1 87642,87643 2d8aA 348 17.55 1yb5A 351 17.77 b.35.1.2,c.2.1.1 116601,116602 1jvbA 347 17.99 b.35.1.2,c.2.1.1 77181,77182 1n8kA 374 18.08 b.35.1.2,c.2.1.1 80298,80299 1lehA 364 18.25 c.2.1.7,c.58.1.1 30268,33916 1iz0A 302 18.72 b.35.1.2,c.2.1.1 83821,83822 2cdcA 366 18.86 1o89A 345 19.02 b.35.1.2,c.2.1.1 92644,92645 1zsyA 357 19.46 1kolA 398 21.20 b.35.1.2,c.2.1.1 77474,77475 1gu7A 364 22.97 b.35.1.2,c.2.1.1 83321,83322 1c1dA 355 24.33 c.2.1.7,c.58.1.1 30270,33918 1nytA 271 24.51 c.2.1.7,c.58.1.5 86417,86418 1x7dA 350 26.17 c.2.1.13 114927 2nloA 302 27.50 1vj1A 363 27.98 b.35.1.2,c.2.1.1 100794,100795 2eggA 297 28.63 1omoA 322 29.78 c.2.1.13 104017 2b5wA 357 29.94 2hk9A 275 32.99 1luaA 287 34.12 c.2.1.7,c.58.1.4 78216,78217 2d5cA 263 36.45 1p77A 272 42.49 c.2.1.7,c.58.1.5 94214,94215 1vi2A 300 46.03 c.2.1.7,c.58.1.5 100726,100727 1nvtA 287 49.36 c.2.1.7,c.58.1.5 86270,86271 1bg6 359 50.22 1vpdA 299 50.49 a.100.1.1,c.2.1.6 113951,113952 1npyA 271 50.96 c.2.1.7,c.58.1.5 85995,85996 2ahrA 259 56.93 a.100.1.10,c.2.1.6 126775,126776 2o7sA 523 57.18 1b26A 416 59.95 c.2.1.7,c.58.1.1 30232,33880 2g5cA 281 62.43 a.100.1.12,c.2.1.6 134646,134647 1bgvA 449 63.68 c.2.1.7,c.58.1.1 30217,33865 1yrlA 491 64.08 1b3bA 415 65.17 c.2.1.7,c.58.1.1 30244,33892 1hdoA 206 66.76 c.2.1.2 60965 2h78A 302 70.93 1ks9A 291 72.02 a.100.1.7,c.2.1.6 68857,68858 1bg6A 359 74.77 a.100.1.5,c.2.1.6 18810,30214 1yb4A 295 77.23 2gptA 523 77.43 3c24A 286 77.59 2a4kA 263 79.16 c.2.1.2 126156 1f0yA 302 79.72 a.100.1.3,c.2.1.6 18793,30197 2ew2A 316 80.21 2graA 277 82.67 1yb1A 272 82.75 c.2.1.2 116599 2nm0A 253 83.53 2exxA 306 85.08 2bmaA 470 87.58 2izzA 322 88.73 2dvmA 439 89.36