# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2vhxA 377 1.921 1wwkA 307 1.956 2nacA 393 2.014 c.2.1.4,c.23.12.1 30088,31348 2vojA 371 2.015 1gdhA 320 2.151 c.2.1.4,c.23.12.1 30095,31355 2g76A 335 2.245 2gcgA 330 2.248 2fssA 365 2.288 2cukA 311 2.384 1pjcA 361 2.417 c.2.1.4,c.23.12.2 30101,31361 2j6iA 364 2.473 2eklA 313 2.537 2dbqA 334 2.626 1mx3A 347 2.947 c.2.1.4,c.23.12.1 79638,79639 2d0iA 333 3.014 1b0aA 288 3.073 c.2.1.7,c.58.1.2 30286,33934 1ygyA 529 3.137 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1xdwA 331 3.396 1x13A 401 3.695 2o4cA 380 3.721 1dxy 333 3.722 1v8bA 479 3.745 c.2.1.4,c.23.12.3 113564,113565 2pi1A 334 3.746 1dxyA 333 3.935 c.2.1.4,c.23.12.1 30094,31354 1a4iA 301 4.026 c.2.1.7,c.58.1.2 30278,33926 1qp8A 303 4.109 c.2.1.4,c.23.12.1 30092,31352 1li4A 432 4.144 c.2.1.4,c.23.12.3 84616,84617 1l7dA 384 4.331 c.2.1.4,c.23.12.2 77774,77775 1j4aA 333 4.333 c.2.1.4,c.23.12.1 71502,71503 1sc6A 404 4.404 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2c2xA 281 4.693 1edzA 320 6.974 c.2.1.7,c.58.1.2 30287,33935 1vj0A 380 7.735 b.35.1.2,c.2.1.1 100786,100787 1yqdA 366 8.766 1uufA 369 9.283 b.35.1.2,c.2.1.1 100006,100007 2cf5A 357 9.471 2ouiA 360 9.662 1gpjA 404 9.98 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1y9aA 360 10.10 2hcyA 347 10.16 1lluA 342 10.21 b.35.1.2,c.2.1.1 91064,91065 2dm6A 333 10.56 b.35.1.2,c.2.1.1 131567,131568 1kolA 398 10.64 b.35.1.2,c.2.1.1 77474,77475 1f8fA 371 10.71 b.35.1.2,c.2.1.1 83246,83247 2qrlA 394 11.37 1tt7A 330 12.26 b.35.1.2,c.2.1.1 112623,112624 1qorA 327 12.29 b.35.1.2,c.2.1.1 24766,29782 1pl8A 356 12.42 b.35.1.2,c.2.1.1 94878,94879 1jvbA 347 12.66 b.35.1.2,c.2.1.1 77181,77182 2h6eA 344 13.35 1h2bA 359 13.35 b.35.1.2,c.2.1.1 90543,90544 2d8aA 348 13.36 2j3hA 345 13.43 2eihA 343 13.72 1yb5A 351 13.92 b.35.1.2,c.2.1.1 116601,116602 2jhfA 374 14.02 b.35.1.2,c.2.1.1 138314,138315 1wlyA 333 14.90 1n8kA 374 15.53 b.35.1.2,c.2.1.1 80298,80299 2cdcA 366 15.67 1iz0A 302 16.71 b.35.1.2,c.2.1.1 83821,83822 1p0fA 373 16.90 b.35.1.2,c.2.1.1 87642,87643 1o89A 345 17.05 b.35.1.2,c.2.1.1 92644,92645 1u3wA 374 18.19 b.35.1.2,c.2.1.1 113013,113014 1gu7A 364 18.48 b.35.1.2,c.2.1.1 83321,83322 1lehA 364 20.54 c.2.1.7,c.58.1.1 30268,33916 2hk9A 275 20.96 2nloA 302 21.52 1zsyA 357 22.41 1nytA 271 22.51 c.2.1.7,c.58.1.5 86417,86418 1c1dA 355 23.28 c.2.1.7,c.58.1.1 30270,33918 2b5wA 357 23.29 2eggA 297 24.59 1vj1A 363 26.21 b.35.1.2,c.2.1.1 100794,100795 1x7dA 350 26.73 c.2.1.13 114927 1omoA 322 27.10 c.2.1.13 104017 2d5cA 263 30.10 1luaA 287 30.95 c.2.1.7,c.58.1.4 78216,78217 1vi2A 300 35.07 c.2.1.7,c.58.1.5 100726,100727 1nvtA 287 36.53 c.2.1.7,c.58.1.5 86270,86271 1b26A 416 38.93 c.2.1.7,c.58.1.1 30232,33880 1p77A 272 41.19 c.2.1.7,c.58.1.5 94214,94215 1b3bA 415 42.21 c.2.1.7,c.58.1.1 30244,33892 2o7sA 523 49.76 1bgvA 449 52.58 c.2.1.7,c.58.1.1 30217,33865 2bmaA 470 55.12 2g5cA 281 57.16 a.100.1.12,c.2.1.6 134646,134647 1gtmA 419 57.21 c.2.1.7,c.58.1.1 30223,33871 1npyA 271 57.29 c.2.1.7,c.58.1.5 85995,85996 1ks9A 291 58.23 a.100.1.7,c.2.1.6 68857,68858 2ahrA 259 60.42 a.100.1.10,c.2.1.6 126775,126776 1vpdA 299 60.63 a.100.1.1,c.2.1.6 113951,113952 2h78A 302 65.11 2izzA 322 68.63 2f1kA 279 68.64 a.100.1.12,c.2.1.6 132772,132773 1bg6 359 69.34 1bg6A 359 69.83 a.100.1.5,c.2.1.6 18810,30214 1yb4A 295 70.77 1yqgA 263 72.31 2gptA 523 75.46 1hwxA 501 78.25 c.2.1.7,c.58.1.1 30250,33898 3c24A 286 82.42 2dvmA 439 83.26 1np3A 338 84.62 a.100.1.2,c.2.1.6 85946,85947 2dpoA 319 84.95 2exxA 306 85.12