# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g76A 335 1.680 2dbqA 334 1.770 1wwkA 307 1.909 2cukA 311 2.071 2vojA 371 2.149 2eklA 313 2.173 1gdhA 320 2.399 c.2.1.4,c.23.12.1 30095,31355 1li4A 432 2.546 c.2.1.4,c.23.12.3 84616,84617 1x13A 401 2.558 2pi1A 334 2.683 2nacA 393 2.693 c.2.1.4,c.23.12.1 30088,31348 2gcgA 330 2.719 2vhxA 377 2.819 1mx3A 347 2.963 c.2.1.4,c.23.12.1 79638,79639 1v8bA 479 2.990 c.2.1.4,c.23.12.3 113564,113565 2fssA 365 3.052 1dxy 333 3.135 1dxyA 333 3.193 c.2.1.4,c.23.12.1 30094,31354 1qp8A 303 3.303 c.2.1.4,c.23.12.1 30092,31352 2j6iA 364 3.430 1j4aA 333 3.692 c.2.1.4,c.23.12.1 71502,71503 1l7dA 384 3.862 c.2.1.4,c.23.12.2 77774,77775 2o4cA 380 4.173 2d0iA 333 4.333 1xdwA 331 4.373 1ygyA 529 4.581 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1pjcA 361 4.872 c.2.1.4,c.23.12.2 30101,31361 1b0aA 288 5.039 c.2.1.7,c.58.1.2 30286,33934 1a4iA 301 5.800 c.2.1.7,c.58.1.2 30278,33926 1c1dA 355 6.061 c.2.1.7,c.58.1.1 30270,33918 1uufA 369 7.436 b.35.1.2,c.2.1.1 100006,100007 1sc6A 404 8.091 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2cf5A 357 8.133 2dm6A 333 8.315 b.35.1.2,c.2.1.1 131567,131568 1vj0A 380 9.147 b.35.1.2,c.2.1.1 100786,100787 2c2xA 281 9.185 1kolA 398 10.77 b.35.1.2,c.2.1.1 77474,77475 1lehA 364 10.78 c.2.1.7,c.58.1.1 30268,33916 1gpjA 404 11.00 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1yqdA 366 11.42 1iz0A 302 11.76 b.35.1.2,c.2.1.1 83821,83822 1f8fA 371 12.23 b.35.1.2,c.2.1.1 83246,83247 1lluA 342 12.31 b.35.1.2,c.2.1.1 91064,91065 1edzA 320 13.20 c.2.1.7,c.58.1.2 30287,33935 2hcyA 347 13.46 2h6eA 344 13.64 1nytA 271 14.39 c.2.1.7,c.58.1.5 86417,86418 1zsyA 357 14.44 2eggA 297 14.80 2j3hA 345 15.27 1jvbA 347 16.51 b.35.1.2,c.2.1.1 77181,77182 1qorA 327 16.57 b.35.1.2,c.2.1.1 24766,29782 1gu7A 364 16.70 b.35.1.2,c.2.1.1 83321,83322 1x7dA 350 17.18 c.2.1.13 114927 2d5cA 263 17.35 2ouiA 360 17.93 1p0fA 373 18.02 b.35.1.2,c.2.1.1 87642,87643 1h2bA 359 18.30 b.35.1.2,c.2.1.1 90543,90544 1o89A 345 18.59 b.35.1.2,c.2.1.1 92644,92645 1tt7A 330 19.09 b.35.1.2,c.2.1.1 112623,112624 1u3wA 374 20.04 b.35.1.2,c.2.1.1 113013,113014 1omoA 322 20.09 c.2.1.13 104017 2jhfA 374 20.24 b.35.1.2,c.2.1.1 138314,138315 1n8kA 374 20.70 b.35.1.2,c.2.1.1 80298,80299 1yb5A 351 21.95 b.35.1.2,c.2.1.1 116601,116602 2hk9A 275 23.40 1y9aA 360 24.17 1wlyA 333 24.38 2eihA 343 24.87 2d8aA 348 26.76 1vpdA 299 27.31 a.100.1.1,c.2.1.6 113951,113952 1vi2A 300 27.94 c.2.1.7,c.58.1.5 100726,100727 1npyA 271 28.43 c.2.1.7,c.58.1.5 85995,85996 1pl8A 356 29.23 b.35.1.2,c.2.1.1 94878,94879 2b5wA 357 30.42 2qrlA 394 30.87 1yrlA 491 31.22 1b3bA 415 32.02 c.2.1.7,c.58.1.1 30244,33892 1vj1A 363 32.27 b.35.1.2,c.2.1.1 100794,100795 1luaA 287 32.37 c.2.1.7,c.58.1.4 78216,78217 2cdcA 366 33.10 1b26A 416 37.07 c.2.1.7,c.58.1.1 30232,33880 1bgvA 449 39.02 c.2.1.7,c.58.1.1 30217,33865 2nloA 302 40.06 2ahrA 259 41.13 a.100.1.10,c.2.1.6 126775,126776 2dvmA 439 41.51 1p77A 272 41.83 c.2.1.7,c.58.1.5 94214,94215 1bg6A 359 41.90 a.100.1.5,c.2.1.6 18810,30214 1f0yA 302 42.01 a.100.1.3,c.2.1.6 18793,30197 1bg6 359 42.69 3c24A 286 43.48 2h78A 302 43.95 1gtmA 419 45.21 c.2.1.7,c.58.1.1 30223,33871 2f1kA 279 45.24 a.100.1.12,c.2.1.6 132772,132773 1np3A 338 47.65 a.100.1.2,c.2.1.6 85946,85947 2bmaA 470 48.66 1hwxA 501 49.15 c.2.1.7,c.58.1.1 30250,33898 1yqgA 263 49.19 1yb4A 295 50.79 2cvzA 289 52.91 a.100.1.1,c.2.1.6 130890,130891 1pvvA 315 54.93 c.78.1.1,c.78.1.1 95190,95191 1othA 321 55.04 c.78.1.1,c.78.1.1 35260,35261 1ml4A 308 61.44 c.78.1.1,c.78.1.1 79255,79256 1qmgA 524 62.39 a.100.1.2,c.2.1.6 18785,30182 2g5cA 281 62.91 a.100.1.12,c.2.1.6 134646,134647 2ef0A 301 63.08 2ew2A 316 64.20 2dpoA 319 66.62 1i36A 264 69.99 a.100.1.8,c.2.1.6 71108,71109 3csuA 310 72.70 c.78.1.1,c.78.1.1 35094,35095 1zq6A 359 74.04 2i6uA 307 76.33 2as0A 396 77.32 b.122.1.9,c.66.1.51 127227,127228 1nvtA 287 79.75 c.2.1.7,c.58.1.5 86270,86271 2pv7A 298 81.50 1jztA 246 81.72 c.104.1.1 63319 2o8nA 265 82.08 1zcjA 463 82.41 1cydA 244 83.60 c.2.1.2 29825 1wxxA 382 85.61 b.122.1.9,c.66.1.51 121418,121419