Best Alignments for T0398

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1b0aA	1.6467e-11	1b0aA/T0398-1b0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.7 c.58.1.2
1li4A	4.3111e-11	1li4A/T0398-1li4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.3
1d4fA	6.6752e-11	1d4fA/T0398-1d4fA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.3
1v8bA	1.0167e-10	1v8bA/T0398-1v8bA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.3
1a4iA	2.5637e-10	1a4iA/T0398-1a4iA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.7 c.58.1.2
2nacA	2.5865e-10	2nacA/T0398-2nacA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
2c2xA	5.4050e-10	2c2xA/T0398-2c2xA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1psdA	2.0870e-09	1psdA/T0398-1psdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1 d.58.18.1
2vhxA	2.8413e-09	2vhxA/T0398-2vhxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wwkA	3.1533e-09	1wwkA/T0398-1wwkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cukA	4.1950e-09	2cukA/T0398-2cukA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1xwfA	4.2483e-09	1xwfA/T0398-1xwfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.3
2qrlA	4.3626e-09	2qrlA/T0398-2qrlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2vojA	4.4457e-09	2vojA/T0398-2vojA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j6iA	5.1375e-09	2j6iA/T0398-2j6iA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g76A	5.9514e-09	2g76A/T0398-2g76A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pi1A	7.0714e-09	2pi1A/T0398-2pi1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1j4aA	7.2966e-09	1j4aA/T0398-1j4aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1
2gcgA	8.0468e-09	2gcgA/T0398-2gcgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qp8A	1.2073e-08	1qp8A/T0398-1qp8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.4 c.23.12.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001