# List of top-scoring protein chains for T0398.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1b0aA 288 9.54e-12 c.2.1.7,c.58.1.2 30286,33934 2eezA 369 1.60e-11 2dbqA 334 2.76e-11 2vhvA 377 2.90e-11 2vhxA 377 3.09e-11 2vojA 371 3.09e-11 1x13A 401 4.19e-11 2c2xA 281 9.70e-11 1pjcA 361 1.01e-10 c.2.1.4,c.23.12.2 30101,31361 1digA 306 1.17e-10 c.2.1.7,c.58.1.2 30282,33930 1a4iA 301 1.18e-10 c.2.1.7,c.58.1.2 30278,33926 1wwkA 307 1.55e-10 1nm5A 384 2.78e-10 c.2.1.4,c.23.12.2 91968,91969 1ptjA 381 2.92e-10 c.2.1.4,c.23.12.2 95099,95100 1l7dA 384 2.92e-10 c.2.1.4,c.23.12.2 77774,77775 2frdA 384 3.11e-10 c.2.1.4,c.23.12.2 133980,133981 2fsvA 384 3.59e-10 c.2.1.4,c.23.12.2 134037,134038 2fr8A 384 3.79e-10 c.2.1.4,c.23.12.2 133973,133974 2rirA 300 1.22e-09 1ygyA 529 1.76e-09 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2gcgA 330 2.82e-09 2q50A 328 2.82e-09 2cukA 311 6.57e-09 2g76A 335 9.96e-09 2pi1A 334 1.08e-07 1gdhA 320 1.26e-07 c.2.1.4,c.23.12.1 30095,31355 1hkuA 358 2.59e-07 c.2.1.4,c.23.12.1 83557,83558 1mx3A 347 2.60e-07 c.2.1.4,c.23.12.1 79638,79639 2omeA 336 2.70e-07 2d0iA 333 3.22e-07 1ybaA 410 1.29e-06 c.2.1.4,c.23.12.1,d.58.18.1 122872,122873,122874 1psdA 409 1.30e-06 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1j49A 333 1.47e-06 c.2.1.4,c.23.12.1 71498,71499 1j4aA 333 1.50e-06 c.2.1.4,c.23.12.1 71502,71503 2p9cA 410 1.50e-06 c.2.1.4,c.23.12.1,d.58.18.1 139556,139557,139558 2p9gA 410 1.50e-06 c.2.1.4,c.23.12.1,d.58.18.1 139574,139575,139576 2eklA 313 1.79e-06 2dldA 337 1.91e-06 c.2.1.4,c.23.12.1 30099,31359 1sc6A 404 1.99e-06 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2gsdA 402 2.50e-06 1dxyA 333 3.52e-06 c.2.1.4,c.23.12.1 30094,31354 2nacA 393 5.56e-06 c.2.1.4,c.23.12.1 30088,31348 2go1A 401 5.58e-06 1xdwA 331 8.48e-06 2fssA 365 2.93e-05 2j6iA 364 2.93e-05 1edzA 320 0.000533 c.2.1.7,c.58.1.2 30287,33935 2o4cA 380 0.000542 1qp8A 303 0.002740 c.2.1.4,c.23.12.1 30092,31352 1xwfA 431 0.06524 c.2.1.4,c.23.12.3 122392,122393 1b3rA 431 0.06941 c.2.1.4,c.23.12.3 30106,31366 1d4fA 431 0.08351 c.2.1.4,c.23.12.3 30110,31370 1li4A 432 0.09436 c.2.1.4,c.23.12.3 84616,84617 1a7aA 432 0.1023 c.2.1.4,c.23.12.3 30104,31364 1gpjA 404 0.1272 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1yqdA 366 0.1526 1v8bA 479 0.2160 c.2.1.4,c.23.12.3 113564,113565 1piwA 360 0.3451 b.35.1.2,c.2.1.1 104156,104157 2hk9A 275 0.5176 2hk8A 269 0.5286 1uufA 369 0.5909 b.35.1.2,c.2.1.1 100006,100007 1vpdA 299 0.6169 a.100.1.1,c.2.1.6 113951,113952 2vdcG 456 0.9525 2cf5A 357 1.100 2dvmA 439 1.821 2i9pA 319 2.393 2gf2A 296 3.088 2a9fA 398 3.471 1v9lA 421 3.879 c.2.1.7,c.58.1.1 113583,113584 2uyyA 316 4.382 2r9zA 463 4.691 2vn8A 375 5.129 1e3jA 352 5.619 b.35.1.2,c.2.1.1 24765,29781 1rjwA 339 5.828 b.35.1.2,c.2.1.1 97582,97583 2yquA 455 5.886 1nhpA 447 6.468 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1c0pA 363 6.486 c.4.1.2,d.16.1.3 30647,37934 1nhqA 447 6.568 c.3.1.5,c.3.1.5,d.87.1.1 30551,30552,40197 2o7sA 523 6.569 1npxA 447 6.572 c.3.1.5,c.3.1.5,d.87.1.1 30557,30558,40200 1nhrA 447 6.803 c.3.1.5,c.3.1.5,d.87.1.1 30553,30554,40198 2jaeA 489 6.914 1f8wA 447 6.944 c.3.1.5,c.3.1.5,d.87.1.1 30561,30562,40202 1nhsA 447 7.466 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2d5cA 263 8.040 1nvtA 287 8.255 c.2.1.7,c.58.1.5 86270,86271 1q1rA 431 8.386 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2d1yA 256 8.449 c.2.1.2 131151 1vl6A 388 8.515 c.2.1.7,c.58.1.3 108724,108725 2haeA 386 8.521 c.2.1.7,c.58.1.3 136278,136279 2dphA 398 8.585 1lvlA 458 8.758 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1z82A 335 9.014 3c24A 286 9.283 1euzA 419 9.427 c.2.1.7,c.58.1.1 59513,59514 1nr7A 496 9.926 c.2.1.7,c.58.1.1 86095,86096 1nr1A 496 10.03 c.2.1.7,c.58.1.1 86080,86081 2v1dA 730 10.22 1l1fA 505 10.43 c.2.1.7,c.58.1.1 73456,73457 2eggA 297 11.70 1np3A 338 11.82 a.100.1.2,c.2.1.6 85946,85947 2h94A 664 11.95 2dw4A 660 11.95 2z3yA 662 11.95 2iw5A 666 11.96 2hqmA 479 12.68 1npdA 288 12.88 c.2.1.7,c.58.1.5 80681,80682 1vi2A 300 13.06 c.2.1.7,c.58.1.5 100726,100727 1dxlA 470 13.65 c.3.1.5,c.3.1.5,d.87.1.1 30585,30586,40214 2hkoA 664 13.71 1nytA 271 15.09 c.2.1.7,c.58.1.5 86417,86418 2iidA 498 16.08 c.3.1.2,d.16.1.5 137426,137427 2nvkX 488 16.68 1o5iA 249 16.80 c.2.1.2 92499 1o89A 345 16.82 b.35.1.2,c.2.1.1 92644,92645 2eerA 347 16.87 1yrlA 491 16.93 1pl8A 356 17.48 b.35.1.2,c.2.1.1 94878,94879 1xhlA 297 20.19 c.2.1.2 109591 2eq6A 464 20.92 1bvuA 418 20.97 c.2.1.7,c.58.1.1 30226,33874 1ihxA 333 21.29 c.2.1.3,d.81.1.1 71211,71212 1bw9B 356 21.49 c.2.1.7,c.58.1.1 30275,33923 1c1xB 355 21.55 c.2.1.7,c.58.1.1 30273,33921 1bxgB 356 21.69 c.2.1.7,c.58.1.1 30277,33925 1bxgA 356 21.80 c.2.1.7,c.58.1.1 30276,33924 2bc0A 490 21.81 1c1dB 355 21.89 c.2.1.7,c.58.1.1 30271,33919 1hwxA 501 21.89 c.2.1.7,c.58.1.1 30250,33898 1xkqA 280 22.06 c.2.1.2 115417 1bw9A 356 22.18 c.2.1.7,c.58.1.1 30274,33922 1c1dA 355 22.20 c.2.1.7,c.58.1.1 30270,33918 1c1xA 355 22.21 c.2.1.7,c.58.1.1 30272,33920 2bcpA 490 22.63 1v59A 478 22.84 c.3.1.5,c.3.1.5,d.87.1.1 119838,119839,119840 1vknA 351 23.13 c.2.1.3,d.81.1.1 108676,108677 2belA 283 23.99 c.2.1.2 116694 3ladA 476 25.06 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1lsuA 147 25.29 c.2.1.9 74250 3cgbA 480 25.70 1nvmB 312 25.93 c.2.1.3,d.81.1.1 86251,86252 1cdoA 374 27.28 b.35.1.2,c.2.1.1 24747,29763 1u3tA 374 27.99 b.35.1.2,c.2.1.1 113001,113002 1kolA 398 28.80 b.35.1.2,c.2.1.1 77474,77475 1kyqA 274 29.59 c.2.1.11,e.37.1.1 73281,73282 1fmcA 255 31.04 c.2.1.2 29856 1xdiA 499 31.38 c.3.1.5,d.87.1.1 115160,115161 1gtmA 419 31.47 c.2.1.7,c.58.1.1 30223,33871 1crwG 333 31.98 c.2.1.3,d.81.1.1 30026,39941 1dssG 333 33.07 c.2.1.3,d.81.1.1 30022,39937 1reoA 486 33.43 c.3.1.2,d.16.1.5 97325,97326 2iltA 275 34.86 1iz0A 302 35.25 b.35.1.2,c.2.1.1 83821,83822 2hmvA 144 35.25 c.2.1.9 136615 1d1sA 373 35.44 b.35.1.2,c.2.1.1 24727,29743 2cd9A 366 36.19 1xu9A 286 36.78 c.2.1.2 116052 2cdcA 366 36.79 2rbeA 275 39.43 1ae1A 273 39.84 c.2.1.2 29943 1zfnA 253 39.86 2cf2D 295 39.88 1zjyA 251 39.88 c.2.1.2 125163 1mgoA 374 39.97 b.35.1.2,c.2.1.1 79094,79095 2hjrA 328 40.86 1zud1 251 41.03 2fwmX 250 41.55 1ebdA 455 42.13 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 2irwA 264 42.20 c.2.1.2 137593 1zk7A 467 42.36 1y9aA 360 42.43 1x31A 964 44.88 2igmA 623 44.92 2pd6A 264 44.94 1n8kA 374 46.21 b.35.1.2,c.2.1.1 80298,80299 1zy8A 474 46.24 1ju9A 374 47.88 b.35.1.2,c.2.1.1 63293,63294 1tytA 487 49.41 c.3.1.5,c.3.1.5,d.87.1.1 30513,30514,40188 1h2bA 359 49.54 b.35.1.2,c.2.1.1 90543,90544 2jhfA 374 49.90 b.35.1.2,c.2.1.1 138314,138315 2gqwA 408 50.13 1axeA 374 50.38 b.35.1.2,c.2.1.1 24681,29697 1typA 487 51.18 c.3.1.5,c.3.1.5,d.87.1.1 30509,30510,40186 1jvbA 347 51.20 b.35.1.2,c.2.1.1 77181,77182 1xseA 295 51.73 c.2.1.2 115925 1jayA 212 51.85 c.2.1.6 66478 1vj0A 380 52.14 b.35.1.2,c.2.1.1 100786,100787 1d1tA 373 52.71 b.35.1.2,c.2.1.1 24719,29735 2dq4A 343 53.50 1u3wA 374 53.78 b.35.1.2,c.2.1.1 113013,113014 1fl2A 310 53.86 c.3.1.5,c.3.1.5 59869,59870 4gpd1 333 54.01 1lluA 342 54.54 b.35.1.2,c.2.1.1 91064,91065 1gerA 450 54.61 c.3.1.5,c.3.1.5,d.87.1.1 30477,30478,40170 1ee2A 373 55.19 b.35.1.2,c.2.1.1 24663,29679 1qv6A 374 55.60 b.35.1.2,c.2.1.1 96348,96349 1zmdA 474 55.72 2gr3A 408 55.81 2f6cA 595 56.04 c.3.1.2,d.16.1.1 133037,133038 1ntoA 347 57.94 b.35.1.2,c.2.1.1 92137,92138 1b3bA 415 57.96 c.2.1.7,c.58.1.1 30244,33892 1lldA 319 61.88 c.2.1.5,d.162.1.1 30177,42144 2tmgA 415 61.95 c.2.1.7,c.58.1.1 30238,33886 1axgA 374 62.54 b.35.1.2,c.2.1.1 24691,29707 1a71A 374 62.85 b.35.1.2,c.2.1.1 24673,29689 2gk6A 624 63.43 2b4qA 276 65.46 1b26A 416 65.63 c.2.1.7,c.58.1.1 30232,33880 1x0vA 354 67.13 1qlhA 374 68.94 b.35.1.2,c.2.1.1 24685,29701 2dfdA 342 69.76 2pv7A 298 70.06 1hyhA 309 70.10 c.2.1.5,d.162.1.1 30150,42117 2tprA 490 71.31 c.3.1.5,c.3.1.5,d.87.1.1 30505,30506,40184 1fecA 490 71.34 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1sevA 362 72.18 1hdzA 374 73.20 b.35.1.2,c.2.1.1 24725,29741 3cumA 302 73.85 2i0zA 447 76.09 2b7sA 571 76.51 a.138.1.3,c.3.1.4,d.168.1.1 128052,128053,128054 1pr9A 244 76.63 c.2.1.2 95060 1smkA 326 77.34 1lpfA 477 78.23 c.3.1.5,c.3.1.5,d.87.1.1 30569,30570,40206 1hdyA 374 78.67 b.35.1.2,c.2.1.1 24723,29739 2ignA 623 79.07 c.3.1.2,d.16.1.1 137369,137370 1p2hA 571 79.25 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1zk4A 251 79.83 c.2.1.2 125176 1tt0A 623 80.28 2fzeA 373 80.39 b.35.1.2,c.2.1.1 134433,134434 1mc5A 374 80.41 b.35.1.2,c.2.1.1 84929,84930 1tzlA 622 80.73 c.3.1.2,d.16.1.1 112876,112877 1luaA 287 80.95 c.2.1.7,c.58.1.4 78216,78217 1lj1A 571 81.17 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 1m64A 571 83.24 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 2nqtA 352 84.39 1u3uA 374 85.00 b.35.1.2,c.2.1.1 113005,113006 2b7rA 571 85.04 a.138.1.3,c.3.1.4,d.168.1.1 128049,128050,128051 1htbA 374 85.31 b.35.1.2,c.2.1.1 24715,29731 5grtA 461 86.34 c.3.1.5,c.3.1.5,d.87.1.1 30465,30466,40164 1p2eA 571 86.67 a.138.1.3,c.3.1.4,d.168.1.1 93926,93927,93928 2nvbA 352 86.85 1xanA 461 87.51 c.3.1.5,c.3.1.5,d.87.1.1 30449,30450,40156 1jrxA 571 88.35 a.138.1.3,c.3.1.4,d.168.1.1 67193,67194,67195 2cduA 452 88.49