# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c2xA 281 1.27e-06 1b0aA 288 3.87e-06 c.2.1.7,c.58.1.2 30286,33934 1ygyA 529 5.91e-06 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2gcgA 330 7.67e-06 2cukA 311 8.10e-06 2g76A 335 8.13e-06 1a4iA 301 9.66e-06 c.2.1.7,c.58.1.2 30278,33926 1gdhA 320 9.88e-06 c.2.1.4,c.23.12.1 30095,31355 2pi1A 334 1.19e-05 1wwkA 307 1.27e-05 2dbqA 334 1.36e-05 2nacA 393 1.37e-05 c.2.1.4,c.23.12.1 30088,31348 1psdA 409 1.55e-05 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1j4aA 333 2.05e-05 c.2.1.4,c.23.12.1 71502,71503 2eklA 313 2.52e-05 1mx3A 347 2.75e-05 c.2.1.4,c.23.12.1 79638,79639 1dxyA 333 2.82e-05 c.2.1.4,c.23.12.1 30094,31354 2vojA 371 3.03e-05 1sc6A 404 3.38e-05 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1dxy 333 3.68e-05 1xdwA 331 3.87e-05 2j6iA 364 4.29e-05 1qp8A 303 4.34e-05 c.2.1.4,c.23.12.1 30092,31352 2d0iA 333 4.49e-05 2fssA 365 4.98e-05 2vhxA 377 6.85e-05 1li4A 432 8.25e-05 c.2.1.4,c.23.12.3 84616,84617 1edzA 320 8.64e-05 c.2.1.7,c.58.1.2 30287,33935 2o4cA 380 8.96e-05 1v8bA 479 0.000107 c.2.1.4,c.23.12.3 113564,113565 1xwfA 431 0.000108 c.2.1.4,c.23.12.3 122392,122393 2qrlA 394 0.000213 1d4fA 431 0.000213 c.2.1.4,c.23.12.3 30110,31370 1pjcA 361 0.002006 c.2.1.4,c.23.12.2 30101,31361 1l7dA 384 0.01363 c.2.1.4,c.23.12.2 77774,77775 1lehA 364 0.02390 c.2.1.7,c.58.1.1 30268,33916 1gpjA 404 0.02777 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1x13A 401 0.04729 1x7dA 350 0.05101 c.2.1.13 114927 2hk9A 275 0.1301 1p77A 272 0.1342 c.2.1.7,c.58.1.5 94214,94215 1vllA 334 0.1556 c.2.1.13 108834 1nytA 271 0.1683 c.2.1.7,c.58.1.5 86417,86418 1vpdA 299 0.2169 a.100.1.1,c.2.1.6 113951,113952 2nloA 302 0.2406 1np3A 338 0.2721 a.100.1.2,c.2.1.6 85946,85947 2d5cA 263 0.3581 1c1dA 355 0.3715 c.2.1.7,c.58.1.1 30270,33918 1omoA 322 0.4535 c.2.1.13 104017 2eggA 297 0.5106 1yrlA 491 0.5398 2f1kA 279 0.5616 a.100.1.12,c.2.1.6 132772,132773 2ahrA 259 0.5682 a.100.1.10,c.2.1.6 126775,126776 1e3jA 352 0.7042 b.35.1.2,c.2.1.1 24765,29781 1uufA 369 0.7694 b.35.1.2,c.2.1.1 100006,100007 1npyA 271 0.8050 c.2.1.7,c.58.1.5 85995,85996 1bg6 359 0.8910 3c24A 286 1.030 2cdcA 366 1.092 2cf5A 357 1.101 1nvtA 287 1.104 c.2.1.7,c.58.1.5 86270,86271 2h78A 302 1.124 2ew2A 316 1.329 1f8fA 371 1.345 b.35.1.2,c.2.1.1 83246,83247 2g5cA 281 1.423 a.100.1.12,c.2.1.6 134646,134647 1vj0A 380 1.439 b.35.1.2,c.2.1.1 100786,100787 1vi2A 300 1.692 c.2.1.7,c.58.1.5 100726,100727 1yqgA 263 1.731 1yqdA 366 1.746 1u3wA 374 1.840 b.35.1.2,c.2.1.1 113013,113014 1bg6A 359 1.847 a.100.1.5,c.2.1.6 18810,30214 2izzA 322 1.915 2dvmA 439 1.930 1lluA 342 1.933 b.35.1.2,c.2.1.1 91064,91065 1jqbA 351 1.934 b.35.1.2,c.2.1.1 77151,77152 1h2bA 359 1.934 b.35.1.2,c.2.1.1 90543,90544 1y9aA 360 1.941 1pl8A 356 1.954 b.35.1.2,c.2.1.1 94878,94879 1luaA 287 1.994 c.2.1.7,c.58.1.4 78216,78217 2h6eA 344 2.009 1ks9A 291 2.126 a.100.1.7,c.2.1.6 68857,68858 2pgd 482 2.191 2d8aA 348 2.257 1evyA 366 2.258 a.100.1.6,c.2.1.6 18811,30215 2hcyA 347 2.272 2b5wA 357 2.415 1kevA 351 2.505 b.35.1.2,c.2.1.1 24749,29765 2pv7A 298 2.706 1p0fA 373 3.298 b.35.1.2,c.2.1.1 87642,87643 2gptA 523 3.329 2p4qA 497 3.362 1iz0A 302 3.486 b.35.1.2,c.2.1.1 83821,83822 1qorA 327 3.757 b.35.1.2,c.2.1.1 24766,29782 1qmgA 524 3.892 a.100.1.2,c.2.1.6 18785,30182 1ff9A 450 3.900 c.2.1.3,d.81.1.2 30039,39954 1pgjA 478 3.912 a.100.1.1,c.2.1.6 18783,30195 2graA 277 4.156 2cvzA 289 4.201 a.100.1.1,c.2.1.6 130890,130891 2eihA 343 4.531 1kyqA 274 4.584 c.2.1.11,e.37.1.1 73281,73282 1zmdA 474 4.773 1jayA 212 4.858 c.2.1.6 66478 1pvvA 315 4.948 c.78.1.1,c.78.1.1 95190,95191 1d7yA 408 4.994 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1jvbA 347 5.440 b.35.1.2,c.2.1.1 77181,77182 1othA 321 5.571 c.78.1.1,c.78.1.1 35260,35261 1n8kA 374 6.010 b.35.1.2,c.2.1.1 80298,80299 1z82A 335 6.090 1dliA 402 6.388 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2pgdA 482 6.424 a.100.1.1,c.2.1.6 18778,30190 1txgA 335 6.535 a.100.1.6,c.2.1.6 112775,112776 1gesA 450 6.769 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 3ladA 476 6.973 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1i36A 264 7.006 a.100.1.8,c.2.1.6 71108,71109 2o7sA 523 7.117 2ohxA 374 7.188 b.35.1.2,c.2.1.1 24669,29685 2ouiA 360 7.288 1mo9A 523 7.804 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1zcjA 463 7.949 1kolA 398 8.121 b.35.1.2,c.2.1.1 77474,77475 1g0oA 283 8.436 c.2.1.2 60181 3grs 478 8.780 1vl6A 388 8.850 c.2.1.7,c.58.1.3 108724,108725 2hmvA 144 8.873 c.2.1.9 136615 1hyuA 521 8.876 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1dljA 402 8.969 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2a4kA 263 9.007 c.2.1.2 126156 2o3jA 481 9.446 1f0yA 302 10.10 a.100.1.3,c.2.1.6 18793,30197 1b3bA 415 10.34 c.2.1.7,c.58.1.1 30244,33892 1fl2A 310 10.53 c.3.1.5,c.3.1.5 59869,59870 1q1rA 431 10.62 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1lsuA 147 10.66 c.2.1.9 74250 1mv8A 436 10.76 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2gqwA 408 11.67 1tt7A 330 11.80 b.35.1.2,c.2.1.1 112623,112624 1ps9A 671 11.91 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1wlyA 333 12.29 1xa0A 328 12.41 b.35.1.2,c.2.1.1 115021,115022 1zejA 293 12.88 1enp 312 13.07 1yb4A 295 13.16 1lssA 140 13.50 c.2.1.9 74246 2dpoA 319 13.67 1hwxA 501 13.69 c.2.1.7,c.58.1.1 30250,33898 1yb5A 351 13.74 b.35.1.2,c.2.1.1 116601,116602 1zk7A 467 14.03 1yqzA 438 14.31 2c0cA 362 15.89 1o89A 345 16.32 b.35.1.2,c.2.1.1 92644,92645 1yb1A 272 16.40 c.2.1.2 116599 1gu7A 364 16.45 b.35.1.2,c.2.1.1 83321,83322 1ml4A 308 16.66 c.78.1.1,c.78.1.1 79255,79256 3c85A 183 16.85 1h7wA 1025 17.10 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2jahA 247 17.29 1d7oA 297 17.47 c.2.1.2 29907 1hrdA 449 17.51 c.2.1.7,c.58.1.1 30219,33867 1tltA 319 17.86 c.2.1.3,d.81.1.5 107135,107136 1ja9A 274 18.28 c.2.1.2 62817 2axqA 467 18.34 2rcyA 262 18.59 1ydeA 270 18.59 c.2.1.2 122980 1hdoA 206 18.95 c.2.1.2 60965 1b26A 416 18.98 c.2.1.7,c.58.1.1 30232,33880 1uluA 261 19.52 c.2.1.2 113292 1o5iA 249 19.99 c.2.1.2 92499 1cjcA 460 20.65 c.3.1.1,c.4.1.1 30319,30604 1xhcA 367 20.78 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1yxmA 303 20.80 c.2.1.2 124192 2ew8A 249 20.84 c.2.1.2 132447 2q0lA 311 21.15 1vl8A 267 21.98 c.2.1.2 108733 2cduA 452 22.13 2h7mA 269 22.86 c.2.1.2 136219 2aefA 234 23.46 2jfgA 445 23.65 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1k2wA 256 24.53 c.2.1.2 90927 1y5mA 276 24.56 c.2.1.2 122645 1up7A 417 25.13 c.2.1.5,d.162.1.2 113374,113375 1pzgA 331 25.20 c.2.1.5,d.162.1.1 95425,95426 1xseA 295 25.32 c.2.1.2 115925 2g1uA 155 25.54 1uzmA 247 25.83 c.2.1.2 119811 1hdcA 253 26.04 c.2.1.2 29862 1nvmB 312 26.18 c.2.1.3,d.81.1.1 86251,86252 1bgvA 449 26.24 c.2.1.7,c.58.1.1 30217,33865 2d1yA 256 26.60 c.2.1.2 131151 1up6A 416 26.71 c.2.1.5,d.162.1.2 107976,107977 2v3aA 384 27.12 2p91A 285 27.42 1fecA 490 27.97 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1xu9A 286 27.97 c.2.1.2 116052 2a9fA 398 28.41 2c07A 285 28.52 c.2.1.2 129577 1dhr 241 28.79 1w6uA 302 28.79 c.2.1.2 114288 1xeaA 323 28.94 c.2.1.3,d.81.1.5 109572,109573 1pjqA 457 29.17 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1vjtA 483 29.32 c.2.1.5,d.162.1.2 100833,100834 2ae2A 260 29.49 c.2.1.2 29945 2j3hA 345 29.65 2qytA 317 29.77 2nm0A 253 29.90 1nhsA 447 29.98 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2pd6A 264 30.11 1wmaA 276 30.65 c.2.1.2 121042 1nhpA 447 30.68 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2dm6A 333 30.70 b.35.1.2,c.2.1.1 131567,131568 1fmcA 255 30.73 c.2.1.2 29856 1x7gA 261 30.87 c.2.1.2 114929 2hq1A 247 30.89 1h6vA 499 30.91 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1cydA 244 30.98 c.2.1.2 29825 1x1eA 239 31.07 1ooeA 236 31.34 c.2.1.2 87196 2iidA 498 32.17 c.3.1.2,d.16.1.5 137426,137427 1h5qA 265 32.24 c.2.1.2 60643 2pnfA 248 32.29 1zbqA 327 32.46 c.2.1.2 124862 1xdzA 240 32.65 c.66.1.20 115196 2i76A 276 32.65 2fwmX 250 32.67 1zemA 262 32.99 c.2.1.2 124984 1zsyA 357 33.54 1qsgA 265 33.62 c.2.1.2 29935 2tmdA 729 33.70 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1bdbA 277 33.76 c.2.1.2 29874 2dtxA 264 33.78 1gegA 256 35.34 c.2.1.2 29888 1trb 320 35.59 1duvG 333 36.50 c.78.1.1,c.78.1.1 35228,35229 3csuA 310 36.86 c.78.1.1,c.78.1.1 35094,35095 2gdzA 267 36.96 c.2.1.2 135043 1hxhA 253 37.78 c.2.1.2 76725 1trbA 320 37.89 c.3.1.5,c.3.1.5 30529,30530 2dknA 255 37.98 2r9zA 463 38.20 1nhp 447 38.37 1fjhA 257 38.50 c.2.1.2 29870 1reoA 486 38.78 c.3.1.2,d.16.1.5 97325,97326 1nffA 260 39.12 c.2.1.2 80457 2v6oA 596 39.21 1o94A 729 39.43 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 2ag5A 246 39.49 c.2.1.2 126719 1yb2A 275 39.95 c.66.1.13 122868 2jhfA 374 40.46 b.35.1.2,c.2.1.1 138314,138315 1b16A 254 40.76 c.2.1.2 29875 2zbwA 335 42.64 1qo8A 566 42.85 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2pjdA 343 43.00 1qydA 313 43.43 c.2.1.2 96583 1b4vA 504 45.06 c.3.1.2,d.16.1.1 30334,37865 1iy8A 267 45.46 c.2.1.2 83774 1zk4A 251 46.06 c.2.1.2 125176 1djqA 729 46.98 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 2bi7A 384 47.31 1w4xA 542 47.85 c.3.1.5,c.3.1.5 109171,109172 1xhlA 297 47.96 c.2.1.2 109591 2i6uA 307 48.20 1e6wA 260 48.25 c.2.1.2 59326 1s6yA 450 48.34 c.2.1.5,d.162.1.2 105314,105315 1gcoA 261 48.97 c.2.1.2 29884 1obbA 480 49.23 c.2.1.5,d.162.1.2 86760,86761 1geeA 261 49.46 c.2.1.2 90509 3ceaA 346 49.68 1q7bA 244 49.81 c.2.1.2 96026 1xtpA 254 49.94 c.66.1.42 116031 1x1tA 260 49.95 c.2.1.2 121597 1xg5A 279 50.03 c.2.1.2 115277 1vqwA 457 50.76 c.3.1.5,c.3.1.5 114028,114029 1u8xX 472 50.99 c.2.1.5,d.162.1.2 107741,107742 1bdb 277 51.97 1m6iA 493 53.31 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1uh5A 329 53.32 c.2.1.2 107840 2cfcA 250 53.36 2bgkA 278 54.03 c.2.1.2 128480 1uxjA 309 55.82 c.2.1.5,d.162.1.1 108112,108113 2o2yA 349 55.94 c.2.1.2 138894 2ph5A 480 58.16 1gteA 1025 59.20 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1kjqA 391 60.15 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2ef0A 301 61.27 1zmtA 254 62.32 c.2.1.2 125363 3grsA 478 62.33 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1yvvA 336 62.41 2jaeA 489 62.58 1eyzA 392 62.89 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 3cc8A 230 63.16 1f8rA 498 63.19 c.3.1.2,d.16.1.5 30410,37974 2qfmA 364 63.31 1gz6A 319 63.54 c.2.1.2 76410 1yovA 537 63.91 c.111.1.2 123785 1cf2O 337 64.45 c.2.1.3,d.81.1.1 29994,39909 1uayA 242 64.47 c.2.1.2 88390 1pwxA 254 64.52 c.2.1.2 95262 2o23A 265 66.51 c.2.1.2 138884 1jg1A 235 67.61 c.66.1.7 66661 2exxA 306 67.65 1spxA 278 68.26 c.2.1.2 98958 1k6xA 352 69.69 c.2.1.2 68238 1zud1 251 69.80 1xkqA 280 70.05 c.2.1.2 115417 1hyhA 309 71.26 c.2.1.5,d.162.1.1 30150,42117 2dc1A 236 71.36 2oosA 338 72.43 2i6tA 303 72.52 2v7pA 310 73.69 2ho3A 325 73.88 2yquA 455 74.81 1xgkA 352 75.68 c.2.1.2 115286 1t2dA 322 75.69 c.2.1.5,d.162.1.1 99084,99085 2glxA 332 76.77 2gv8A 447 77.65 c.3.1.5,c.3.1.5 135759,135760 1gtmA 419 77.78 c.2.1.7,c.58.1.1 30223,33871 1vj1A 363 78.56 b.35.1.2,c.2.1.1 100794,100795 1js1X 324 79.04 c.78.1.1,c.78.1.1 71834,71835 1zq6A 359 79.14 2qq5A 260 80.13 1i1nA 226 81.15 c.66.1.7 71102 1vid 221 82.64 1x0vA 354 83.28 1id1A 153 83.77 c.2.1.9 62286 1zmoA 244 84.95 2gciA 360 85.68 c.123.1.1 134983 1d5tA 433 86.78 c.3.1.3,d.16.1.6 30422,37986 1pbeA 394 87.44 c.3.1.2,d.16.1.2 30338,37869 1y8qA 346 87.56 4uagA 437 88.99 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1s3eA 520 89.46 c.3.1.2,d.16.1.5 98426,98427 1ldg 316 89.76