# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c2xA 281 8.34e-07 1ygyA 529 4.52e-06 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1b0aA 288 5.37e-06 c.2.1.7,c.58.1.2 30286,33934 2cukA 311 5.50e-06 2g76A 335 6.04e-06 1wwkA 307 6.08e-06 2gcgA 330 6.50e-06 1gdhA 320 7.53e-06 c.2.1.4,c.23.12.1 30095,31355 2pi1A 334 7.75e-06 1psdA 409 7.85e-06 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2nacA 393 8.93e-06 c.2.1.4,c.23.12.1 30088,31348 1a4iA 301 9.49e-06 c.2.1.7,c.58.1.2 30278,33926 2dbqA 334 1.07e-05 2eklA 313 1.22e-05 1j4aA 333 1.31e-05 c.2.1.4,c.23.12.1 71502,71503 1dxyA 333 1.98e-05 c.2.1.4,c.23.12.1 30094,31354 1xdwA 331 2.09e-05 2vojA 371 2.19e-05 1sc6A 404 2.22e-05 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1mx3A 347 2.78e-05 c.2.1.4,c.23.12.1 79638,79639 2j6iA 364 2.97e-05 1dxy 333 2.98e-05 2fssA 365 3.17e-05 1qp8A 303 3.32e-05 c.2.1.4,c.23.12.1 30092,31352 2d0iA 333 3.66e-05 1edzA 320 4.00e-05 c.2.1.7,c.58.1.2 30287,33935 1li4A 432 5.55e-05 c.2.1.4,c.23.12.3 84616,84617 2vhxA 377 5.66e-05 2o4cA 380 6.29e-05 1v8bA 479 7.28e-05 c.2.1.4,c.23.12.3 113564,113565 2qrlA 394 0.000104 1xwfA 431 0.000109 c.2.1.4,c.23.12.3 122392,122393 1d4fA 431 0.000136 c.2.1.4,c.23.12.3 30110,31370 1pjcA 361 0.002200 c.2.1.4,c.23.12.2 30101,31361 1l7dA 384 0.02067 c.2.1.4,c.23.12.2 77774,77775 1lehA 364 0.02866 c.2.1.7,c.58.1.1 30268,33916 1gpjA 404 0.04129 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1x13A 401 0.05310 1x7dA 350 0.05774 c.2.1.13 114927 2hk9A 275 0.1351 1p77A 272 0.1597 c.2.1.7,c.58.1.5 94214,94215 1vllA 334 0.1891 c.2.1.13 108834 1nytA 271 0.1999 c.2.1.7,c.58.1.5 86417,86418 1c1dA 355 0.2237 c.2.1.7,c.58.1.1 30270,33918 1vpdA 299 0.2393 a.100.1.1,c.2.1.6 113951,113952 1np3A 338 0.3553 a.100.1.2,c.2.1.6 85946,85947 2nloA 302 0.4078 2d5cA 263 0.5616 2eggA 297 0.6760 1yrlA 491 0.7084 2f1kA 279 0.7121 a.100.1.12,c.2.1.6 132772,132773 2ahrA 259 0.7184 a.100.1.10,c.2.1.6 126775,126776 1e3jA 352 0.7391 b.35.1.2,c.2.1.1 24765,29781 1omoA 322 0.7411 c.2.1.13 104017 1uufA 369 0.8878 b.35.1.2,c.2.1.1 100006,100007 2h78A 302 1.042 1f8fA 371 1.112 b.35.1.2,c.2.1.1 83246,83247 1nvtA 287 1.279 c.2.1.7,c.58.1.5 86270,86271 3c24A 286 1.280 1npyA 271 1.411 c.2.1.7,c.58.1.5 85995,85996 2cdcA 366 1.573 1bg6 359 1.705 1vj0A 380 1.711 b.35.1.2,c.2.1.1 100786,100787 2ew2A 316 1.726 2dvmA 439 1.792 1pl8A 356 1.949 b.35.1.2,c.2.1.1 94878,94879 1u3wA 374 2.041 b.35.1.2,c.2.1.1 113013,113014 2g5cA 281 2.140 a.100.1.12,c.2.1.6 134646,134647 1yqgA 263 2.141 1vi2A 300 2.166 c.2.1.7,c.58.1.5 100726,100727 1luaA 287 2.230 c.2.1.7,c.58.1.4 78216,78217 2pgd 482 2.236 1h2bA 359 2.242 b.35.1.2,c.2.1.1 90543,90544 1jqbA 351 2.251 b.35.1.2,c.2.1.1 77151,77152 1yqdA 366 2.433 1y9aA 360 2.433 1lluA 342 2.468 b.35.1.2,c.2.1.1 91064,91065 1bg6A 359 2.531 a.100.1.5,c.2.1.6 18810,30214 2cf5A 357 2.598 2izzA 322 2.694 1evyA 366 2.712 a.100.1.6,c.2.1.6 18811,30215 1p0fA 373 2.780 b.35.1.2,c.2.1.1 87642,87643 1kevA 351 2.808 b.35.1.2,c.2.1.1 24749,29765 1pgjA 478 2.838 a.100.1.1,c.2.1.6 18783,30195 2b5wA 357 3.189 2h6eA 344 3.273 1n8kA 374 3.286 b.35.1.2,c.2.1.1 80298,80299 1iz0A 302 3.758 b.35.1.2,c.2.1.1 83821,83822 1ks9A 291 3.769 a.100.1.7,c.2.1.6 68857,68858 2p4qA 497 3.959 2pv7A 298 4.061 2cvzA 289 4.381 a.100.1.1,c.2.1.6 130890,130891 2d8aA 348 4.432 1zmdA 474 4.712 1jayA 212 4.863 c.2.1.6 66478 2hcyA 347 4.907 1qmgA 524 5.318 a.100.1.2,c.2.1.6 18785,30182 1kyqA 274 5.324 c.2.1.11,e.37.1.1 73281,73282 3ladA 476 5.357 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1qorA 327 5.444 b.35.1.2,c.2.1.1 24766,29782 2graA 277 5.473 1hyuA 521 5.831 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1i36A 264 5.908 a.100.1.8,c.2.1.6 71108,71109 1z82A 335 5.912 1zk7A 467 5.986 2a4kA 263 6.023 c.2.1.2 126156 1xhcA 367 6.349 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2eihA 343 6.441 1gesA 450 6.590 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 3grs 478 6.607 2ohxA 374 7.081 b.35.1.2,c.2.1.1 24669,29685 1mo9A 523 7.152 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1ff9A 450 7.309 c.2.1.3,d.81.1.2 30039,39954 1kolA 398 7.317 b.35.1.2,c.2.1.1 77474,77475 1d7yA 408 7.480 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2jhfA 374 7.787 b.35.1.2,c.2.1.1 138314,138315 1yb4A 295 7.839 1jvbA 347 8.191 b.35.1.2,c.2.1.1 77181,77182 2gptA 523 8.652 1txgA 335 8.862 a.100.1.6,c.2.1.6 112775,112776 2ouiA 360 9.139 1ps9A 671 9.423 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1g0oA 283 9.560 c.2.1.2 60181 2pgdA 482 10.10 a.100.1.1,c.2.1.6 18778,30190 1vl6A 388 10.39 c.2.1.7,c.58.1.3 108724,108725 1lsuA 147 10.56 c.2.1.9 74250 2hmvA 144 11.09 c.2.1.9 136615 1q1rA 431 11.25 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1fl2A 310 11.36 c.3.1.5,c.3.1.5 59869,59870 1dliA 402 11.50 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1lssA 140 12.03 c.2.1.9 74246 1cjcA 460 12.18 c.3.1.1,c.4.1.1 30319,30604 1pvvA 315 12.36 c.78.1.1,c.78.1.1 95190,95191 1trb 320 12.46 1f0yA 302 12.83 a.100.1.3,c.2.1.6 18793,30197 1othA 321 12.94 c.78.1.1,c.78.1.1 35260,35261 2o7sA 523 13.23 1zcjA 463 13.24 2o3jA 481 13.33 1dljA 402 13.33 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2gqwA 408 14.74 1zejA 293 15.10 3c85A 183 15.20 1hwxA 501 15.28 c.2.1.7,c.58.1.1 30250,33898 1tt7A 330 16.08 b.35.1.2,c.2.1.1 112623,112624 1yb5A 351 16.30 b.35.1.2,c.2.1.1 116601,116602 1b26A 416 16.37 c.2.1.7,c.58.1.1 30232,33880 2q0lA 311 16.63 1enp 312 16.98 2dpoA 319 17.07 1mv8A 436 18.05 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2tmdA 729 18.76 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1hrdA 449 19.84 c.2.1.7,c.58.1.1 30219,33867 2v6oA 596 20.03 1b3bA 415 20.06 c.2.1.7,c.58.1.1 30244,33892 2rcyA 262 20.23 2v3aA 384 20.72 1wlyA 333 20.99 1o94A 729 22.32 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1xa0A 328 22.50 b.35.1.2,c.2.1.1 115021,115022 1ja9A 274 22.63 c.2.1.2 62817 1uluA 261 22.80 c.2.1.2 113292 2aefA 234 23.52 1d7oA 297 23.74 c.2.1.2 29907 1gu7A 364 23.79 b.35.1.2,c.2.1.1 83321,83322 2jahA 247 23.83 1yb1A 272 23.98 c.2.1.2 116599 2axqA 467 24.65 1o89A 345 25.19 b.35.1.2,c.2.1.1 92644,92645 2cduA 452 25.52 1xeaA 323 26.07 c.2.1.3,d.81.1.5 109572,109573 1fecA 490 26.12 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2c0cA 362 26.19 1xdiA 499 26.48 c.3.1.5,d.87.1.1 115160,115161 2j3hA 345 26.78 2d1yA 256 26.93 c.2.1.2 131151 2r9zA 463 28.51 2iidA 498 28.58 c.3.1.2,d.16.1.5 137426,137427 1h7wA 1025 28.76 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2qytA 317 28.89 1s6yA 450 28.93 c.2.1.5,d.162.1.2 105314,105315 2gagA 965 29.14 2zbwA 335 29.46 1yqzA 438 29.49 2h7mA 269 29.72 c.2.1.2 136219 1nhp 447 30.36 1tltA 319 30.93 c.2.1.3,d.81.1.5 107135,107136 1qo8A 566 31.07 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1ydeA 270 31.46 c.2.1.2 122980 1bgvA 449 31.89 c.2.1.7,c.58.1.1 30217,33865 1bdbA 277 32.82 c.2.1.2 29874 1xseA 295 32.94 c.2.1.2 115925 1m6iA 493 33.13 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1up6A 416 33.54 c.2.1.5,d.162.1.2 107976,107977 1vl8A 267 33.82 c.2.1.2 108733 1nhsA 447 33.89 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2g1uA 155 34.15 3cox 507 34.18 1vqwA 457 34.77 c.3.1.5,c.3.1.5 114028,114029 1o5iA 249 34.80 c.2.1.2 92499 2ew8A 249 35.63 c.2.1.2 132447 1xu9A 286 35.86 c.2.1.2 116052 2pnfA 248 36.02 1k2wA 256 36.33 c.2.1.2 90927 1dhr 241 36.42 1uh5A 329 36.55 c.2.1.2 107840 1h6vA 499 36.58 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 2gdzA 267 36.94 c.2.1.2 135043 1y5mA 276 36.95 c.2.1.2 122645 1trbA 320 36.98 c.3.1.5,c.3.1.5 30529,30530 1reoA 486 37.27 c.3.1.2,d.16.1.5 97325,97326 2p91A 285 37.41 1lvlA 458 37.44 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1ooeA 236 38.24 c.2.1.2 87196 1hdoA 206 38.58 c.2.1.2 60965 1up7A 417 38.63 c.2.1.5,d.162.1.2 113374,113375 2i76A 276 38.89 1xdzA 240 39.59 c.66.1.20 115196 2c07A 285 40.28 c.2.1.2 129577 1qsgA 265 40.91 c.2.1.2 29935 2jfgA 445 40.95 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2nm0A 253 41.33 1djqA 729 41.58 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1hxhA 253 41.79 c.2.1.2 76725 1w4xA 542 42.83 c.3.1.5,c.3.1.5 109171,109172 1yxmA 303 43.35 c.2.1.2 124192 2pd6A 264 43.86 1b4vA 504 44.18 c.3.1.2,d.16.1.1 30334,37865 1uzmA 247 44.82 c.2.1.2 119811 1yb2A 275 44.88 c.66.1.13 122868 1nffA 260 45.01 c.2.1.2 80457 1nhpA 447 45.87 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2a9fA 398 46.06 1ykjA 394 46.23 2hq1A 247 47.32 2bgkA 278 48.28 c.2.1.2 128480 1zsyA 357 48.31 2qfmA 364 48.38 1w6uA 302 48.41 c.2.1.2 114288 1gteA 1025 48.62 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1pjqA 457 49.05 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2dm6A 333 49.33 b.35.1.2,c.2.1.1 131567,131568 1zbqA 327 49.41 c.2.1.2 124862 1hdcA 253 50.05 c.2.1.2 29862 2ae2A 260 51.05 c.2.1.2 29945 1wmaA 276 52.27 c.2.1.2 121042 1e6wA 260 52.55 c.2.1.2 59326 1u8xX 472 53.47 c.2.1.5,d.162.1.2 107741,107742 1pzgA 331 53.60 c.2.1.5,d.162.1.1 95425,95426 2ag5A 246 53.86 c.2.1.2 126719 1x7gA 261 53.93 c.2.1.2 114929 1hyhA 309 54.20 c.2.1.5,d.162.1.1 30150,42117 1gtmA 419 54.79 c.2.1.7,c.58.1.1 30223,33871 1cydA 244 56.31 c.2.1.2 29825 1bdb 277 56.71 1ml4A 308 57.39 c.78.1.1,c.78.1.1 79255,79256 2dtxA 264 57.40 2pjdA 343 57.75 1b16A 254 58.18 c.2.1.2 29875 3cc8A 230 58.49 1iy8A 267 60.24 c.2.1.2 83774 1nvmB 312 60.27 c.2.1.3,d.81.1.1 86251,86252 1eny 268 60.72 1f06A 320 61.33 c.2.1.3,d.81.1.3 59556,59557 1xtpA 254 61.78 c.66.1.42 116031 1h5qA 265 62.05 c.2.1.2 60643 2cfcA 250 62.33 1d5tA 433 63.09 c.3.1.3,d.16.1.6 30422,37986 2cvjA 180 63.58 1yovA 537 63.69 c.111.1.2 123785 1lc0A 294 63.81 c.2.1.3,d.81.1.4 73823,73824 1zemA 262 64.12 c.2.1.2 124984 1i1nA 226 64.16 c.66.1.7 71102 2fwmX 250 64.32 2qq5A 260 64.52 1zk4A 251 64.71 c.2.1.2 125176 1q7bA 244 65.21 c.2.1.2 96026 1gegA 256 65.34 c.2.1.2 29888 1uxjA 309 65.71 c.2.1.5,d.162.1.1 108112,108113 1vjtA 483 66.03 c.2.1.5,d.162.1.2 100833,100834 1x1eA 239 66.04 3grsA 478 66.16 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1gcoA 261 67.65 c.2.1.2 29884 2yquA 455 68.62 1geeA 261 68.73 c.2.1.2 90509 2v7pA 310 69.69 1gz6A 319 70.30 c.2.1.2 76410 1f8rA 498 70.44 c.3.1.2,d.16.1.5 30410,37974 1k0iA 394 71.35 c.3.1.2,d.16.1.2 67942,67943 3c6kA 381 72.25 1fmcA 255 74.74 c.2.1.2 29856 1zud1 251 75.26 2gv8A 447 75.97 c.3.1.5,c.3.1.5 135759,135760 2o23A 265 76.39 c.2.1.2 138884 2ywlA 180 77.09 1x1tA 260 77.63 c.2.1.2 121597 2bi7A 384 77.66 1qydA 313 77.84 c.2.1.2 96583 4uagA 437 78.58 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1xhlA 297 79.85 c.2.1.2 109591 2dknA 255 80.33 2z3yA 662 80.94 2glxA 332 80.97 1xg5A 279 81.21 c.2.1.2 115277 1yvvA 336 81.81 1fjhA 257 82.61 c.2.1.2 29870 2i6tA 303 83.31 3ceaA 346 84.33 1gcuA 295 85.17 c.2.1.3,d.81.1.4 30063,39978 1pbe 394 85.91 1y8qA 346 88.27 1i9gA 280 88.60 c.66.1.13 62090 1kpgA 287 88.68 c.66.1.18 68735 1kjqA 391 89.14 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2dc1A 236 89.17 1cf2O 337 89.59 c.2.1.3,d.81.1.1 29994,39909