# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c2xA 281 9.90e-06 1b0aA 288 5.99e-05 c.2.1.7,c.58.1.2 30286,33934 2g76A 335 8.20e-05 2eklA 313 8.25e-05 2cukA 311 8.45e-05 1a4iA 301 8.81e-05 c.2.1.7,c.58.1.2 30278,33926 1ygyA 529 9.14e-05 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1wwkA 307 0.000104 2gcgA 330 0.000113 1gdhA 320 0.000129 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.000132 c.2.1.4,c.23.12.1 30088,31348 2pi1A 334 0.000148 2dbqA 334 0.000150 1psdA 409 0.000240 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1mx3A 347 0.000251 c.2.1.4,c.23.12.1 79638,79639 1j4aA 333 0.000284 c.2.1.4,c.23.12.1 71502,71503 2vhxA 377 0.000305 2vojA 371 0.000306 2j6iA 364 0.000337 2fssA 365 0.000357 1qp8A 303 0.000372 c.2.1.4,c.23.12.1 30092,31352 2d0iA 333 0.000460 1dxy 333 0.000484 1dxyA 333 0.000515 c.2.1.4,c.23.12.1 30094,31354 1sc6A 404 0.000523 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1xdwA 331 0.000533 1li4A 432 0.000646 c.2.1.4,c.23.12.3 84616,84617 1v8bA 479 0.000693 c.2.1.4,c.23.12.3 113564,113565 1xwfA 431 0.000795 c.2.1.4,c.23.12.3 122392,122393 2o4cA 380 0.000941 1edzA 320 0.001010 c.2.1.7,c.58.1.2 30287,33935 2qrlA 394 0.001148 1d4fA 431 0.001258 c.2.1.4,c.23.12.3 30110,31370 1pjcA 361 0.005750 c.2.1.4,c.23.12.2 30101,31361 1l7dA 384 0.03670 c.2.1.4,c.23.12.2 77774,77775 1gpjA 404 0.08432 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1x13A 401 0.1164 1lehA 364 0.1345 c.2.1.7,c.58.1.1 30268,33916 1x7dA 350 0.1778 c.2.1.13 114927 2hk9A 275 0.2723 1p77A 272 0.4146 c.2.1.7,c.58.1.5 94214,94215 1vllA 334 0.5941 c.2.1.13 108834 1nytA 271 0.5956 c.2.1.7,c.58.1.5 86417,86418 1c1dA 355 0.6152 c.2.1.7,c.58.1.1 30270,33918 2nloA 302 0.6325 1vpdA 299 0.6446 a.100.1.1,c.2.1.6 113951,113952 2eggA 297 0.8293 1omoA 322 0.9617 c.2.1.13 104017 1np3A 338 1.249 a.100.1.2,c.2.1.6 85946,85947 1yrlA 491 1.384 2d5cA 263 1.475 2f1kA 279 1.833 a.100.1.12,c.2.1.6 132772,132773 1nvtA 287 2.257 c.2.1.7,c.58.1.5 86270,86271 3c24A 286 2.427 1e3jA 352 2.440 b.35.1.2,c.2.1.1 24765,29781 2h78A 302 2.557 1vi2A 300 2.679 c.2.1.7,c.58.1.5 100726,100727 1bg6 359 2.765 2ahrA 259 3.544 a.100.1.10,c.2.1.6 126775,126776 1npyA 271 4.188 c.2.1.7,c.58.1.5 85995,85996 2dvmA 439 4.648 1luaA 287 5.486 c.2.1.7,c.58.1.4 78216,78217 2ew2A 316 5.490 1vj0A 380 5.626 b.35.1.2,c.2.1.1 100786,100787 1qmgA 524 5.693 a.100.1.2,c.2.1.6 18785,30182 1bg6A 359 5.750 a.100.1.5,c.2.1.6 18810,30214 1ks9A 291 6.112 a.100.1.7,c.2.1.6 68857,68858 1u3wA 374 6.343 b.35.1.2,c.2.1.1 113013,113014 2g5cA 281 6.473 a.100.1.12,c.2.1.6 134646,134647 1yqgA 263 6.704 2a4kA 263 6.721 c.2.1.2 126156 3grs 478 7.630 2pgd 482 7.852 1lluA 342 8.391 b.35.1.2,c.2.1.1 91064,91065 1p0fA 373 8.534 b.35.1.2,c.2.1.1 87642,87643 2cf5A 357 8.640 2hcyA 347 8.863 1jayA 212 8.962 c.2.1.6 66478 2cdcA 366 9.086 1evyA 366 9.376 a.100.1.6,c.2.1.6 18811,30215 2izzA 322 9.594 2p4qA 497 10.03 1n8kA 374 10.25 b.35.1.2,c.2.1.1 80298,80299 1ff9A 450 10.39 c.2.1.3,d.81.1.2 30039,39954 2graA 277 10.72 1pgjA 478 10.73 a.100.1.1,c.2.1.6 18783,30195 1mo9A 523 10.87 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 3ladA 476 11.09 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1jqbA 351 11.16 b.35.1.2,c.2.1.1 77151,77152 1y9aA 360 11.29 1f0yA 302 11.68 a.100.1.3,c.2.1.6 18793,30197 1f8fA 371 11.69 b.35.1.2,c.2.1.1 83246,83247 1i36A 264 11.73 a.100.1.8,c.2.1.6 71108,71109 2cvzA 289 12.52 a.100.1.1,c.2.1.6 130890,130891 2eihA 343 12.58 1uufA 369 12.80 b.35.1.2,c.2.1.1 100006,100007 1yqdA 366 12.91 1qorA 327 13.33 b.35.1.2,c.2.1.1 24766,29782 1pl8A 356 14.25 b.35.1.2,c.2.1.1 94878,94879 1yb4A 295 14.44 2pv7A 298 14.46 1pvvA 315 14.91 c.78.1.1,c.78.1.1 95190,95191 1d7yA 408 15.28 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2h6eA 344 15.30 1othA 321 15.32 c.78.1.1,c.78.1.1 35260,35261 1g0oA 283 15.37 c.2.1.2 60181 1dliA 402 15.53 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1zk7A 467 16.03 1uluA 261 16.17 c.2.1.2 113292 2b5wA 357 16.19 1z82A 335 16.96 1enp 312 17.33 1yb1A 272 17.72 c.2.1.2 116599 1ja9A 274 17.74 c.2.1.2 62817 1b3bA 415 18.33 c.2.1.7,c.58.1.1 30244,33892 2ohxA 374 18.35 b.35.1.2,c.2.1.1 24669,29685 2d1yA 256 18.47 c.2.1.2 131151 1fl2A 310 18.61 c.3.1.5,c.3.1.5 59869,59870 1o89A 345 18.71 b.35.1.2,c.2.1.1 92644,92645 1trb 320 18.87 2gptA 523 18.99 1b26A 416 19.06 c.2.1.7,c.58.1.1 30232,33880 1iz0A 302 19.11 b.35.1.2,c.2.1.1 83821,83822 1xa0A 328 20.23 b.35.1.2,c.2.1.1 115021,115022 2o7sA 523 20.41 1hwxA 501 20.58 c.2.1.7,c.58.1.1 30250,33898 1yb5A 351 20.62 b.35.1.2,c.2.1.1 116601,116602 1o5iA 249 20.64 c.2.1.2 92499 1hrdA 449 20.73 c.2.1.7,c.58.1.1 30219,33867 1gesA 450 20.96 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1zmdA 474 21.05 2yquA 455 21.23 1kevA 351 21.79 b.35.1.2,c.2.1.1 24749,29765 1hyuA 521 21.79 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2c0cA 362 22.06 1y5mA 276 22.28 c.2.1.2 122645 1xseA 295 22.33 c.2.1.2 115925 1zcjA 463 22.36 1tt7A 330 22.70 b.35.1.2,c.2.1.1 112623,112624 1h2bA 359 22.99 b.35.1.2,c.2.1.1 90543,90544 2o3jA 481 23.17 2pgdA 482 23.41 a.100.1.1,c.2.1.6 18778,30190 2nm0A 253 23.42 1mv8A 436 23.45 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1vl6A 388 23.82 c.2.1.7,c.58.1.3 108724,108725 1b16A 254 23.83 c.2.1.2 29875 1vl8A 267 23.89 c.2.1.2 108733 2ag5A 246 23.91 c.2.1.2 126719 1dljA 402 23.98 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2j3hA 345 23.99 1xhcA 367 24.16 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1yxmA 303 24.33 c.2.1.2 124192 1txgA 335 24.52 a.100.1.6,c.2.1.6 112775,112776 1cydA 244 24.59 c.2.1.2 29825 2hmvA 144 24.70 c.2.1.9 136615 1zbqA 327 24.73 c.2.1.2 124862 1gu7A 364 25.47 b.35.1.2,c.2.1.1 83321,83322 1w6uA 302 25.57 c.2.1.2 114288 1kyqA 274 25.98 c.2.1.11,e.37.1.1 73281,73282 2jahA 247 26.31 1ydeA 270 26.62 c.2.1.2 122980 1xu9A 286 26.71 c.2.1.2 116052 2dpoA 319 27.46 2ew8A 249 27.63 c.2.1.2 132447 1ml4A 308 27.90 c.78.1.1,c.78.1.1 79255,79256 2r9zA 463 28.07 1kolA 398 28.38 b.35.1.2,c.2.1.1 77474,77475 1zemA 262 28.72 c.2.1.2 124984 2bgkA 278 28.80 c.2.1.2 128480 1zejA 293 29.07 1bgvA 449 29.33 c.2.1.7,c.58.1.1 30217,33865 1d7oA 297 29.34 c.2.1.2 29907 1iy8A 267 29.61 c.2.1.2 83774 1wlyA 333 29.84 1q7bA 244 29.85 c.2.1.2 96026 1qsgA 265 30.02 c.2.1.2 29935 2v6oA 596 30.31 1bdbA 277 30.34 c.2.1.2 29874 2axqA 467 30.53 1uzmA 247 31.08 c.2.1.2 119811 2p91A 285 31.25 1hxhA 253 31.55 c.2.1.2 76725 1wmaA 276 31.77 c.2.1.2 121042 2d8aA 348 32.29 1nffA 260 32.43 c.2.1.2 80457 2gqwA 408 33.96 1e6wA 260 34.26 c.2.1.2 59326 1k2wA 256 34.39 c.2.1.2 90927 1fmcA 255 34.46 c.2.1.2 29856 1lsuA 147 34.73 c.2.1.9 74250 1gcoA 261 35.91 c.2.1.2 29884 2cduA 452 36.14 2pnfA 248 36.38 1cjcA 460 36.58 c.3.1.1,c.4.1.1 30319,30604 1gz6A 319 36.65 c.2.1.2 76410 1geeA 261 36.67 c.2.1.2 90509 2gdzA 267 36.91 c.2.1.2 135043 1bdb 277 36.91 2gagA 965 37.61 2fwmX 250 38.35 1fecA 490 39.00 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1xhlA 297 39.79 c.2.1.2 109591 1q1rA 431 40.19 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2ekpA 239 41.10 2dtxA 264 41.26 2eq6A 464 41.32 2tmdA 729 41.87 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1jvbA 347 42.01 b.35.1.2,c.2.1.1 77181,77182 1nvmB 312 42.09 c.2.1.3,d.81.1.1 86251,86252 1hdcA 253 42.63 c.2.1.2 29862 2c07A 285 43.02 c.2.1.2 129577 1zk4A 251 43.02 c.2.1.2 125176 2rcyA 262 43.04 1h6vA 499 43.36 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1ps9A 671 43.43 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2dm6A 333 43.90 b.35.1.2,c.2.1.1 131567,131568 1ooeA 236 44.12 c.2.1.2 87196 1uh5A 329 44.28 c.2.1.2 107840 2hq1A 247 44.38 1dhr 241 44.56 3grsA 478 45.09 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2iidA 498 45.37 c.3.1.2,d.16.1.5 137426,137427 1h7wA 1025 45.40 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2ae2A 260 45.49 c.2.1.2 29945 1yqzA 438 45.76 1h5qA 265 45.84 c.2.1.2 60643 2o23A 265 46.18 c.2.1.2 138884 2ouiA 360 48.14 1zsyA 357 48.27 2a9fA 398 49.20 3csuA 310 49.58 c.78.1.1,c.78.1.1 35094,35095 2jfgA 445 49.85 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2g1uA 155 51.15 1spxA 278 51.34 c.2.1.2 98958 1gegA 256 51.60 c.2.1.2 29888 1xkqA 280 52.89 c.2.1.2 115417 1o94A 729 52.91 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 2cfcA 250 54.30 1x7gA 261 56.52 c.2.1.2 114929 2jhfA 374 56.91 b.35.1.2,c.2.1.1 138314,138315 1m6iA 493 57.39 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1xtpA 254 57.51 c.66.1.42 116031 1x1eA 239 58.62 1hdoA 206 59.07 c.2.1.2 60965 1x1tA 260 59.77 c.2.1.2 121597 1n5dA 288 60.49 c.2.1.2 80030 2h7mA 269 60.82 c.2.1.2 136219 2v3aA 384 61.48 1nhpA 447 61.83 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1gtmA 419 62.54 c.2.1.7,c.58.1.1 30223,33871 1xdzA 240 62.87 c.66.1.20 115196 1nhp 447 64.09 1gteA 1025 64.26 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1lvlA 458 65.40 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1nhsA 447 65.61 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1xg5A 279 67.14 c.2.1.2 115277 1reoA 486 67.72 c.3.1.2,d.16.1.5 97325,97326 2o2yA 349 68.51 c.2.1.2 138894 1tltA 319 68.58 c.2.1.3,d.81.1.5 107135,107136 2qytA 317 69.34 2q0lA 311 71.42 1sbyA 254 71.74 c.2.1.2 118930 1ykjA 394 72.09 2dknA 255 72.46 1pwxA 254 72.49 c.2.1.2 95262 2i76A 276 73.42 2qq5A 260 74.86 1trbA 320 75.14 c.3.1.5,c.3.1.5 30529,30530 1vj1A 363 75.25 b.35.1.2,c.2.1.1 100794,100795 1zmtA 254 75.96 c.2.1.2 125363 1zmoA 244 76.93 1qydA 313 78.17 c.2.1.2 96583 2ef0A 301 78.21 2aefA 234 78.25 1pzgA 331 78.33 c.2.1.5,d.162.1.1 95425,95426 1jsxA 207 78.88 c.66.1.20 71846 1jw9B 249 81.52 c.111.1.1 67377 1f8rA 498 81.89 c.3.1.2,d.16.1.5 30410,37974 3c85A 183 82.64 4uagA 437 84.43 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1xdiA 499 86.38 c.3.1.5,d.87.1.1 115160,115161 1up7A 417 87.48 c.2.1.5,d.162.1.2 113374,113375 2nwqA 272 87.82 1h1dA 221 88.81 c.66.1.1 83452 2cvjA 180 89.84