# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c2xA 281 1.49e-06 1b0aA 288 5.16e-06 c.2.1.7,c.58.1.2 30286,33934 1ygyA 529 9.55e-06 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2cukA 311 9.97e-06 2gcgA 330 1.03e-05 2g76A 335 1.04e-05 1a4iA 301 1.30e-05 c.2.1.7,c.58.1.2 30278,33926 1gdhA 320 1.32e-05 c.2.1.4,c.23.12.1 30095,31355 1wwkA 307 1.46e-05 2nacA 393 1.53e-05 c.2.1.4,c.23.12.1 30088,31348 2pi1A 334 1.63e-05 2dbqA 334 1.98e-05 1psdA 409 2.19e-05 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2eklA 313 2.28e-05 1j4aA 333 2.46e-05 c.2.1.4,c.23.12.1 71502,71503 1dxyA 333 2.83e-05 c.2.1.4,c.23.12.1 30094,31354 1mx3A 347 3.09e-05 c.2.1.4,c.23.12.1 79638,79639 2vojA 371 3.81e-05 1xdwA 331 4.36e-05 1dxy 333 4.68e-05 1sc6A 404 5.35e-05 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2d0iA 333 5.64e-05 2fssA 365 5.90e-05 2j6iA 364 5.98e-05 1edzA 320 7.47e-05 c.2.1.7,c.58.1.2 30287,33935 1qp8A 303 7.70e-05 c.2.1.4,c.23.12.1 30092,31352 2vhxA 377 8.25e-05 1li4A 432 0.000102 c.2.1.4,c.23.12.3 84616,84617 1v8bA 479 0.000144 c.2.1.4,c.23.12.3 113564,113565 1xwfA 431 0.000156 c.2.1.4,c.23.12.3 122392,122393 2o4cA 380 0.000168 2qrlA 394 0.000221 1d4fA 431 0.000228 c.2.1.4,c.23.12.3 30110,31370 1pjcA 361 0.002071 c.2.1.4,c.23.12.2 30101,31361 1l7dA 384 0.02623 c.2.1.4,c.23.12.2 77774,77775 1lehA 364 0.04033 c.2.1.7,c.58.1.1 30268,33916 1gpjA 404 0.04543 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1x13A 401 0.06667 1x7dA 350 0.07573 c.2.1.13 114927 1p77A 272 0.2031 c.2.1.7,c.58.1.5 94214,94215 2hk9A 275 0.2039 1nytA 271 0.2517 c.2.1.7,c.58.1.5 86417,86418 1vllA 334 0.3579 c.2.1.13 108834 1np3A 338 0.4008 a.100.1.2,c.2.1.6 85946,85947 1vpdA 299 0.4052 a.100.1.1,c.2.1.6 113951,113952 2nloA 302 0.4131 2d5cA 263 0.6370 2eggA 297 0.9139 1c1dA 355 0.9261 c.2.1.7,c.58.1.1 30270,33918 1yrlA 491 0.9754 2f1kA 279 0.9927 a.100.1.12,c.2.1.6 132772,132773 1omoA 322 1.067 c.2.1.13 104017 1e3jA 352 1.128 b.35.1.2,c.2.1.1 24765,29781 1bg6 359 1.159 1luaA 287 1.436 c.2.1.7,c.58.1.4 78216,78217 1nvtA 287 1.470 c.2.1.7,c.58.1.5 86270,86271 1uufA 369 1.747 b.35.1.2,c.2.1.1 100006,100007 2cdcA 366 1.783 2h78A 302 1.869 2ahrA 259 1.966 a.100.1.10,c.2.1.6 126775,126776 2ew2A 316 1.995 1vi2A 300 2.011 c.2.1.7,c.58.1.5 100726,100727 1npyA 271 2.144 c.2.1.7,c.58.1.5 85995,85996 1bg6A 359 2.353 a.100.1.5,c.2.1.6 18810,30214 1f8fA 371 2.378 b.35.1.2,c.2.1.1 83246,83247 1vj0A 380 2.456 b.35.1.2,c.2.1.1 100786,100787 2pgd 482 2.888 2g5cA 281 2.955 a.100.1.12,c.2.1.6 134646,134647 2izzA 322 2.988 3c24A 286 3.266 2cf5A 357 3.275 1y9aA 360 3.298 1lluA 342 3.340 b.35.1.2,c.2.1.1 91064,91065 1u3wA 374 3.563 b.35.1.2,c.2.1.1 113013,113014 1ks9A 291 3.595 a.100.1.7,c.2.1.6 68857,68858 2dvmA 439 3.766 1pl8A 356 3.835 b.35.1.2,c.2.1.1 94878,94879 1yqdA 366 3.915 1jqbA 351 4.003 b.35.1.2,c.2.1.1 77151,77152 1yqgA 263 4.187 2hcyA 347 4.562 1p0fA 373 4.687 b.35.1.2,c.2.1.1 87642,87643 1evyA 366 5.076 a.100.1.6,c.2.1.6 18811,30215 3ladA 476 5.492 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1kevA 351 5.673 b.35.1.2,c.2.1.1 24749,29765 2pv7A 298 5.742 1qmgA 524 6.106 a.100.1.2,c.2.1.6 18785,30182 1h2bA 359 6.119 b.35.1.2,c.2.1.1 90543,90544 2gptA 523 6.247 2p4qA 497 6.312 2b5wA 357 6.422 1ff9A 450 6.496 c.2.1.3,d.81.1.2 30039,39954 1jayA 212 6.549 c.2.1.6 66478 1d7yA 408 6.593 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1iz0A 302 6.607 b.35.1.2,c.2.1.1 83821,83822 1n8kA 374 7.002 b.35.1.2,c.2.1.1 80298,80299 1zmdA 474 7.148 1qorA 327 7.214 b.35.1.2,c.2.1.1 24766,29782 2eihA 343 7.530 3grs 478 7.645 1gesA 450 7.985 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1i36A 264 8.083 a.100.1.8,c.2.1.6 71108,71109 1pgjA 478 8.111 a.100.1.1,c.2.1.6 18783,30195 2graA 277 8.437 1z82A 335 8.469 1pvvA 315 8.982 c.78.1.1,c.78.1.1 95190,95191 1hyuA 521 9.003 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2ohxA 374 9.030 b.35.1.2,c.2.1.1 24669,29685 1mo9A 523 9.764 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2cvzA 289 10.06 a.100.1.1,c.2.1.6 130890,130891 2d8aA 348 10.61 2o3jA 481 10.63 1txgA 335 10.71 a.100.1.6,c.2.1.6 112775,112776 1fl2A 310 11.00 c.3.1.5,c.3.1.5 59869,59870 2o7sA 523 11.03 1othA 321 11.14 c.78.1.1,c.78.1.1 35260,35261 1xhcA 367 11.65 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2pgdA 482 11.75 a.100.1.1,c.2.1.6 18778,30190 2hmvA 144 12.02 c.2.1.9 136615 1ps9A 671 12.10 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2a4kA 263 12.10 c.2.1.2 126156 1q1rA 431 13.82 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1jvbA 347 14.41 b.35.1.2,c.2.1.1 77181,77182 1kolA 398 14.52 b.35.1.2,c.2.1.1 77474,77475 1cjcA 460 14.85 c.3.1.1,c.4.1.1 30319,30604 1f0yA 302 14.90 a.100.1.3,c.2.1.6 18793,30197 2gqwA 408 15.45 1kyqA 274 16.20 c.2.1.11,e.37.1.1 73281,73282 1g0oA 283 16.25 c.2.1.2 60181 2h6eA 344 17.21 1enp 312 17.77 1mv8A 436 17.83 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1lsuA 147 17.96 c.2.1.9 74250 1dliA 402 18.24 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2ouiA 360 18.67 1yb4A 295 19.36 1zejA 293 20.39 1yb1A 272 20.44 c.2.1.2 116599 1trb 320 20.51 1zk7A 467 20.93 1zcjA 463 21.34 1dljA 402 21.34 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2tmdA 729 21.79 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 3c85A 183 23.19 2q0lA 311 24.08 1lssA 140 25.25 c.2.1.9 74246 1h7wA 1025 25.29 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2v3aA 384 25.81 1gu7A 364 25.94 b.35.1.2,c.2.1.1 83321,83322 2jahA 247 26.67 1vl6A 388 27.29 c.2.1.7,c.58.1.3 108724,108725 2dpoA 319 27.29 1o94A 729 27.41 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1tt7A 330 27.95 b.35.1.2,c.2.1.1 112623,112624 2g1uA 155 27.96 1hrdA 449 28.05 c.2.1.7,c.58.1.1 30219,33867 1xeaA 323 28.52 c.2.1.3,d.81.1.5 109572,109573 1hwxA 501 28.90 c.2.1.7,c.58.1.1 30250,33898 2c0cA 362 29.65 1yb5A 351 29.68 b.35.1.2,c.2.1.1 116601,116602 1ydeA 270 30.43 c.2.1.2 122980 1fecA 490 31.13 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2axqA 467 31.16 1xa0A 328 31.28 b.35.1.2,c.2.1.1 115021,115022 1k2wA 256 31.88 c.2.1.2 90927 1xseA 295 32.67 c.2.1.2 115925 1y5mA 276 33.07 c.2.1.2 122645 1d7oA 297 33.64 c.2.1.2 29907 2rcyA 262 34.66 1xu9A 286 34.91 c.2.1.2 116052 2qytA 317 35.10 1m6iA 493 35.65 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2j3hA 345 35.83 2v6oA 596 35.97 2d1yA 256 37.38 c.2.1.2 131151 1b3bA 415 37.41 c.2.1.7,c.58.1.1 30244,33892 2h7mA 269 38.03 c.2.1.2 136219 2c07A 285 39.52 c.2.1.2 129577 1wlyA 333 39.52 1h6vA 499 40.28 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1tltA 319 40.28 c.2.1.3,d.81.1.5 107135,107136 1trbA 320 40.42 c.3.1.5,c.3.1.5 30529,30530 1o5iA 249 40.53 c.2.1.2 92499 1hdoA 206 40.64 c.2.1.2 60965 1yxmA 303 41.15 c.2.1.2 124192 2nm0A 253 41.27 1x7gA 261 41.77 c.2.1.2 114929 1nvmB 312 42.01 c.2.1.3,d.81.1.1 86251,86252 2ae2A 260 42.06 c.2.1.2 29945 1e6wA 260 42.16 c.2.1.2 59326 2ew8A 249 42.26 c.2.1.2 132447 2p91A 285 42.61 1vl8A 267 42.80 c.2.1.2 108733 2pd6A 264 42.88 1pjqA 457 42.91 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1xdzA 240 43.35 c.66.1.20 115196 1wmaA 276 43.47 c.2.1.2 121042 1dhr 241 43.71 1qo8A 566 43.81 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1xg5A 279 44.02 c.2.1.2 115277 1s6yA 450 44.36 c.2.1.5,d.162.1.2 105314,105315 2zbwA 335 44.42 1nhpA 447 44.48 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2pnfA 248 44.80 1nhsA 447 45.27 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1uluA 261 46.05 c.2.1.2 113292 1zbqA 327 46.24 c.2.1.2 124862 1q7bA 244 47.01 c.2.1.2 96026 1up7A 417 47.10 c.2.1.5,d.162.1.2 113374,113375 1ooeA 236 47.20 c.2.1.2 87196 1djqA 729 47.21 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 2iidA 498 47.26 c.3.1.2,d.16.1.5 137426,137427 1ml4A 308 47.51 c.78.1.1,c.78.1.1 79255,79256 2bgkA 278 47.64 c.2.1.2 128480 2cduA 452 48.09 1zemA 262 48.25 c.2.1.2 124984 1uzmA 247 48.59 c.2.1.2 119811 1hxhA 253 49.01 c.2.1.2 76725 2gdzA 267 49.09 c.2.1.2 135043 1xdiA 499 49.12 c.3.1.5,d.87.1.1 115160,115161 1bdbA 277 49.36 c.2.1.2 29874 1o89A 345 49.53 b.35.1.2,c.2.1.1 92644,92645 1nffA 260 49.64 c.2.1.2 80457 1b26A 416 49.72 c.2.1.7,c.58.1.1 30232,33880 2dm6A 333 50.19 b.35.1.2,c.2.1.1 131567,131568 1hdcA 253 50.23 c.2.1.2 29862 1cydA 244 50.25 c.2.1.2 29825 1uh5A 329 50.27 c.2.1.2 107840 1ja9A 274 51.15 c.2.1.2 62817 2hq1A 247 52.03 1xtpA 254 52.47 c.66.1.42 116031 1w4xA 542 52.86 c.3.1.5,c.3.1.5 109171,109172 1nhp 447 53.44 1xhlA 297 53.46 c.2.1.2 109591 2o23A 265 55.06 c.2.1.2 138884 1h5qA 265 55.21 c.2.1.2 60643 2aefA 234 55.27 1bgvA 449 56.78 c.2.1.7,c.58.1.1 30217,33865 2r9zA 463 57.84 3cox 507 57.90 2qfmA 364 59.08 1gegA 256 59.11 c.2.1.2 29888 2ag5A 246 59.37 c.2.1.2 126719 1zsyA 357 60.47 1n5dA 288 60.95 c.2.1.2 80030 1vqwA 457 62.00 c.3.1.5,c.3.1.5 114028,114029 3grsA 478 62.10 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1vjtA 483 62.66 c.2.1.5,d.162.1.2 100833,100834 1jg1A 235 63.44 c.66.1.7 66661 1reoA 486 63.76 c.3.1.2,d.16.1.5 97325,97326 2jfgA 445 64.73 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1id1A 153 65.30 c.2.1.9 62286 1qsgA 265 65.42 c.2.1.2 29935 3ceaA 346 66.82 1iy8A 267 67.21 c.2.1.2 83774 2jhfA 374 67.80 b.35.1.2,c.2.1.1 138314,138315 1ykjA 394 68.92 1x1eA 239 70.25 2cvjA 180 70.66 1fmcA 255 71.68 c.2.1.2 29856 2pjdA 343 72.21 1obbA 480 72.56 c.2.1.5,d.162.1.2 86760,86761 1yb2A 275 73.06 c.66.1.13 122868 1bdb 277 74.35 1kpgA 287 76.46 c.66.1.18 68735 1b16A 254 76.70 c.2.1.2 29875 3cc8A 230 76.78 1w6uA 302 76.87 c.2.1.2 114288 1pzgA 331 77.24 c.2.1.5,d.162.1.1 95425,95426 2qq5A 260 77.45 2bi7A 384 78.00 1gteA 1025 78.72 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2glxA 332 79.87 1i1nA 226 80.98 c.66.1.7 71102 2fwmX 250 81.14 2dtxA 264 81.14 2ef0A 301 81.16 1b4vA 504 81.31 c.3.1.2,d.16.1.1 30334,37865 1x1tA 260 82.00 c.2.1.2 121597 2yquA 455 82.46 2o2yA 349 82.57 c.2.1.2 138894 1f8rA 498 82.95 c.3.1.2,d.16.1.5 30410,37974 1h1dA 221 83.31 c.66.1.1 83452 2jaeA 489 84.17 1yqzA 438 84.89 1u8xX 472 85.44 c.2.1.5,d.162.1.2 107741,107742 2dknA 255 86.06 2z1nA 260 88.28 1d5tA 433 88.84 c.3.1.3,d.16.1.6 30422,37986 1geeA 261 88.91 c.2.1.2 90509 1duvG 333 89.72 c.78.1.1,c.78.1.1 35228,35229 2cfcA 250 89.85