# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c2xA 281 0.000338 1b0aA 288 0.000568 c.2.1.7,c.58.1.2 30286,33934 1wwkA 307 0.000913 2cukA 311 0.000971 2g76A 335 0.001048 2gcgA 330 0.001138 1gdhA 320 0.001338 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.001544 c.2.1.4,c.23.12.1 30088,31348 1a4iA 301 0.001700 c.2.1.7,c.58.1.2 30278,33926 1ygyA 529 0.001704 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2pi1A 334 0.001814 1j4aA 333 0.001879 c.2.1.4,c.23.12.1 71502,71503 2eklA 313 0.002005 1psdA 409 0.002115 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2dbqA 334 0.002242 1dxyA 333 0.002644 c.2.1.4,c.23.12.1 30094,31354 2fssA 365 0.002711 2vojA 371 0.002730 1mx3A 347 0.003356 c.2.1.4,c.23.12.1 79638,79639 1xdwA 331 0.003529 2j6iA 364 0.003654 1dxy 333 0.003704 2vhxA 377 0.004208 1v8bA 479 0.004416 c.2.1.4,c.23.12.3 113564,113565 1sc6A 404 0.004681 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1qp8A 303 0.004754 c.2.1.4,c.23.12.1 30092,31352 1li4A 432 0.005056 c.2.1.4,c.23.12.3 84616,84617 1xwfA 431 0.005211 c.2.1.4,c.23.12.3 122392,122393 2d0iA 333 0.006059 1d4fA 431 0.007510 c.2.1.4,c.23.12.3 30110,31370 2o4cA 380 0.007796 2qrlA 394 0.007912 1edzA 320 0.008633 c.2.1.7,c.58.1.2 30287,33935 1pjcA 361 0.03458 c.2.1.4,c.23.12.2 30101,31361 1l7dA 384 0.1655 c.2.1.4,c.23.12.2 77774,77775 1gpjA 404 0.2197 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1lehA 364 0.3014 c.2.1.7,c.58.1.1 30268,33916 1x7dA 350 0.4009 c.2.1.13 114927 1x13A 401 0.4284 2hk9A 275 0.8665 1p77A 272 1.077 c.2.1.7,c.58.1.5 94214,94215 2nloA 302 1.143 1vllA 334 1.240 c.2.1.13 108834 1nytA 271 1.378 c.2.1.7,c.58.1.5 86417,86418 1c1dA 355 1.723 c.2.1.7,c.58.1.1 30270,33918 1vpdA 299 1.956 a.100.1.1,c.2.1.6 113951,113952 1omoA 322 2.314 c.2.1.13 104017 2d5cA 263 2.585 2eggA 297 2.655 1luaA 287 2.819 c.2.1.7,c.58.1.4 78216,78217 1yrlA 491 3.122 1u3wA 374 3.160 b.35.1.2,c.2.1.1 113013,113014 1nvtA 287 3.251 c.2.1.7,c.58.1.5 86270,86271 1e3jA 352 3.368 b.35.1.2,c.2.1.1 24765,29781 1vj0A 380 3.549 b.35.1.2,c.2.1.1 100786,100787 1np3A 338 3.774 a.100.1.2,c.2.1.6 85946,85947 1npyA 271 3.923 c.2.1.7,c.58.1.5 85995,85996 1pl8A 356 4.026 b.35.1.2,c.2.1.1 94878,94879 2ahrA 259 4.057 a.100.1.10,c.2.1.6 126775,126776 1vi2A 300 4.264 c.2.1.7,c.58.1.5 100726,100727 1p0fA 373 4.320 b.35.1.2,c.2.1.1 87642,87643 2f1kA 279 4.630 a.100.1.12,c.2.1.6 132772,132773 2h78A 302 4.993 3c24A 286 5.188 1f8fA 371 6.013 b.35.1.2,c.2.1.1 83246,83247 2hcyA 347 6.555 1lluA 342 6.875 b.35.1.2,c.2.1.1 91064,91065 2ohxA 374 7.204 b.35.1.2,c.2.1.1 24669,29685 2cf5A 357 7.453 1kevA 351 7.866 b.35.1.2,c.2.1.1 24749,29765 1yqdA 366 8.348 2izzA 322 8.544 1yqgA 263 8.586 2cdcA 366 8.747 1uufA 369 9.382 b.35.1.2,c.2.1.1 100006,100007 2dvmA 439 9.622 1qmgA 524 10.10 a.100.1.2,c.2.1.6 18785,30182 1pvvA 315 11.07 c.78.1.1,c.78.1.1 95190,95191 1y9aA 360 11.25 1h2bA 359 11.32 b.35.1.2,c.2.1.1 90543,90544 1jayA 212 11.74 c.2.1.6 66478 2ew2A 316 12.02 1iz0A 302 12.22 b.35.1.2,c.2.1.1 83821,83822 2pgd 482 12.39 1d7yA 408 12.87 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1bg6 359 13.08 2b5wA 357 13.11 2d8aA 348 13.29 2pv7A 298 13.44 1ks9A 291 13.57 a.100.1.7,c.2.1.6 68857,68858 1qorA 327 13.62 b.35.1.2,c.2.1.1 24766,29782 3grs 478 13.65 1pgjA 478 13.92 a.100.1.1,c.2.1.6 18783,30195 2h6eA 344 14.13 1i36A 264 14.64 a.100.1.8,c.2.1.6 71108,71109 2p4qA 497 14.66 2eihA 343 15.17 1fl2A 310 15.70 c.3.1.5,c.3.1.5 59869,59870 3ladA 476 15.99 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1hyuA 521 16.03 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1jqbA 351 16.16 b.35.1.2,c.2.1.1 77151,77152 1evyA 366 16.18 a.100.1.6,c.2.1.6 18811,30215 2o3jA 481 16.38 1jvbA 347 16.46 b.35.1.2,c.2.1.1 77181,77182 2o7sA 523 16.80 1n8kA 374 17.48 b.35.1.2,c.2.1.1 80298,80299 1kolA 398 18.68 b.35.1.2,c.2.1.1 77474,77475 1bg6A 359 19.18 a.100.1.5,c.2.1.6 18810,30214 1ps9A 671 19.23 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1mo9A 523 19.81 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2a4kA 263 19.87 c.2.1.2 126156 2graA 277 19.88 1gesA 450 19.89 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1ff9A 450 20.23 c.2.1.3,d.81.1.2 30039,39954 1f0yA 302 20.32 a.100.1.3,c.2.1.6 18793,30197 2g5cA 281 20.36 a.100.1.12,c.2.1.6 134646,134647 2hmvA 144 20.43 c.2.1.9 136615 2gptA 523 21.36 1b3bA 415 23.11 c.2.1.7,c.58.1.1 30244,33892 1kyqA 274 23.14 c.2.1.11,e.37.1.1 73281,73282 1dliA 402 23.69 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1z82A 335 25.14 1othA 321 25.16 c.78.1.1,c.78.1.1 35260,35261 1xhcA 367 25.41 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1hwxA 501 26.41 c.2.1.7,c.58.1.1 30250,33898 1yb4A 295 26.45 1q1rA 431 27.08 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1zcjA 463 27.32 1lssA 140 27.44 c.2.1.9 74246 1bgvA 449 28.43 c.2.1.7,c.58.1.1 30217,33865 1lsuA 147 28.63 c.2.1.9 74250 1cjcA 460 28.91 c.3.1.1,c.4.1.1 30319,30604 1gnd 447 28.96 2q0lA 311 29.09 1yb5A 351 29.45 b.35.1.2,c.2.1.1 116601,116602 1vl6A 388 29.90 c.2.1.7,c.58.1.3 108724,108725 1yb1A 272 30.33 c.2.1.2 116599 1o94A 729 30.92 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 2j3hA 345 31.28 2cvzA 289 31.29 a.100.1.1,c.2.1.6 130890,130891 1tt7A 330 31.74 b.35.1.2,c.2.1.1 112623,112624 3c85A 183 31.93 2pgdA 482 32.63 a.100.1.1,c.2.1.6 18778,30190 1fecA 490 33.06 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1zk7A 467 33.51 2gqwA 408 34.09 2v6oA 596 34.52 1nhsA 447 34.70 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1wlyA 333 34.95 1h7wA 1025 35.10 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1txgA 335 35.78 a.100.1.6,c.2.1.6 112775,112776 1yqzA 438 36.28 2dpoA 319 36.43 1dljA 402 37.07 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1nhp 447 37.85 2tmdA 729 37.88 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1hrdA 449 37.95 c.2.1.7,c.58.1.1 30219,33867 2i6uA 307 38.08 2c0cA 362 38.19 1xa0A 328 38.39 b.35.1.2,c.2.1.1 115021,115022 1gu7A 364 38.44 b.35.1.2,c.2.1.1 83321,83322 2g1uA 155 38.62 2h7mA 269 39.92 c.2.1.2 136219 1zmdA 474 40.23 2zbwA 335 41.44 2jahA 247 41.70 1trb 320 42.12 2rcyA 262 43.77 1zejA 293 43.94 1xeaA 323 44.01 c.2.1.3,d.81.1.5 109572,109573 1xseA 295 45.11 c.2.1.2 115925 2jhfA 374 45.14 b.35.1.2,c.2.1.1 138314,138315 2yquA 455 45.29 1vqwA 457 45.67 c.3.1.5,c.3.1.5 114028,114029 1f8rA 498 45.67 c.3.1.2,d.16.1.5 30410,37974 1xu9A 286 47.10 c.2.1.2 116052 1o89A 345 47.78 b.35.1.2,c.2.1.1 92644,92645 2aefA 234 47.98 1yxmA 303 48.09 c.2.1.2 124192 1p2hA 571 48.33 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1nhpA 447 49.07 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2ouiA 360 49.67 1xtpA 254 49.75 c.66.1.42 116031 1bdbA 277 50.27 c.2.1.2 29874 1y5mA 276 51.80 c.2.1.2 122645 1m6iA 493 52.63 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2dm6A 333 52.92 b.35.1.2,c.2.1.1 131567,131568 1enp 312 53.20 1ml4A 308 54.05 c.78.1.1,c.78.1.1 79255,79256 2v3aA 384 54.08 1yb2A 275 54.23 c.66.1.13 122868 1b16A 254 55.09 c.2.1.2 29875 2jaeA 489 55.87 1cydA 244 57.70 c.2.1.2 29825 1b26A 416 59.92 c.2.1.7,c.58.1.1 30232,33880 1ooeA 236 60.09 c.2.1.2 87196 1w4xA 542 60.30 c.3.1.5,c.3.1.5 109171,109172 1zbqA 327 61.43 c.2.1.2 124862 1nvmB 312 62.37 c.2.1.3,d.81.1.1 86251,86252 2nm0A 253 62.41 1djqA 729 62.91 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1dhr 241 62.92 1d5tA 433 62.99 c.3.1.3,d.16.1.6 30422,37986 1wmaA 276 63.71 c.2.1.2 121042 1zsyA 357 63.86 1hdcA 253 66.06 c.2.1.2 29862 1xhlA 297 66.89 c.2.1.2 109591 1ydeA 270 67.39 c.2.1.2 122980 1trbA 320 67.96 c.3.1.5,c.3.1.5 30529,30530 1v0jA 399 68.92 1uzmA 247 69.76 c.2.1.2 119811 2a9fA 398 69.88 1xdiA 499 71.22 c.3.1.5,d.87.1.1 115160,115161 2qfmA 364 71.66 1h1dA 221 72.78 c.66.1.1 83452 2eq6A 464 72.96 2r9zA 463 73.44 1jg1A 235 74.93 c.66.1.7 66661 1x7gA 261 75.19 c.2.1.2 114929 3grsA 478 75.33 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2qytA 317 75.57 1bdb 277 77.42 1uwvA 433 77.64 b.40.4.12,c.66.1.40 100128,100129 1k2wA 256 78.03 c.2.1.2 90927 2gv8A 447 78.53 c.3.1.5,c.3.1.5 135759,135760 1zemA 262 78.54 c.2.1.2 124984 2ew8A 249 78.99 c.2.1.2 132447 1y0pA 571 79.13 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1h5qA 265 79.16 c.2.1.2 60643 1xdzA 240 79.77 c.66.1.20 115196 2cduA 452 80.95 1duvG 333 82.74 c.78.1.1,c.78.1.1 35228,35229 1i9gA 280 84.42 c.66.1.13 62090 3csuA 310 86.30 c.78.1.1,c.78.1.1 35094,35095 1i1nA 226 86.57 c.66.1.7 71102 1ykjA 394 86.60 1id1A 153 87.61 c.2.1.9 62286 2dtxA 264 88.17 1xg5A 279 88.93 c.2.1.2 115277 1uxjA 309 89.14 c.2.1.5,d.162.1.1 108112,108113