# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c2xA 281 2.08e-06 1b0aA 288 7.55e-06 c.2.1.7,c.58.1.2 30286,33934 1ygyA 529 1.03e-05 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2gcgA 330 1.26e-05 2cukA 311 1.28e-05 2g76A 335 1.30e-05 1wwkA 307 1.60e-05 1gdhA 320 1.62e-05 c.2.1.4,c.23.12.1 30095,31355 1a4iA 301 1.68e-05 c.2.1.7,c.58.1.2 30278,33926 2nacA 393 1.87e-05 c.2.1.4,c.23.12.1 30088,31348 2pi1A 334 2.00e-05 1psdA 409 2.20e-05 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2dbqA 334 2.46e-05 1j4aA 333 2.77e-05 c.2.1.4,c.23.12.1 71502,71503 2eklA 313 2.89e-05 1dxyA 333 3.50e-05 c.2.1.4,c.23.12.1 30094,31354 2vojA 371 3.74e-05 1mx3A 347 3.99e-05 c.2.1.4,c.23.12.1 79638,79639 1sc6A 404 5.01e-05 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1xdwA 331 5.09e-05 1dxy 333 5.86e-05 2d0iA 333 6.61e-05 2fssA 365 7.11e-05 2j6iA 364 7.64e-05 1edzA 320 8.77e-05 c.2.1.7,c.58.1.2 30287,33935 2vhxA 377 9.19e-05 1qp8A 303 9.92e-05 c.2.1.4,c.23.12.1 30092,31352 1li4A 432 0.000125 c.2.1.4,c.23.12.3 84616,84617 1v8bA 479 0.000168 c.2.1.4,c.23.12.3 113564,113565 1xwfA 431 0.000176 c.2.1.4,c.23.12.3 122392,122393 2o4cA 380 0.000179 2qrlA 394 0.000237 1d4fA 431 0.000315 c.2.1.4,c.23.12.3 30110,31370 1pjcA 361 0.002433 c.2.1.4,c.23.12.2 30101,31361 1l7dA 384 0.02418 c.2.1.4,c.23.12.2 77774,77775 1lehA 364 0.04383 c.2.1.7,c.58.1.1 30268,33916 1gpjA 404 0.04755 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1x13A 401 0.06083 1x7dA 350 0.07462 c.2.1.13 114927 1p77A 272 0.2007 c.2.1.7,c.58.1.5 94214,94215 2hk9A 275 0.2117 1nytA 271 0.2692 c.2.1.7,c.58.1.5 86417,86418 1vllA 334 0.3025 c.2.1.13 108834 2nloA 302 0.3837 1vpdA 299 0.3892 a.100.1.1,c.2.1.6 113951,113952 1np3A 338 0.4861 a.100.1.2,c.2.1.6 85946,85947 2d5cA 263 0.7062 1c1dA 355 0.8731 c.2.1.7,c.58.1.1 30270,33918 1omoA 322 0.8780 c.2.1.13 104017 2eggA 297 0.9487 1yrlA 491 0.9529 1e3jA 352 1.138 b.35.1.2,c.2.1.1 24765,29781 2f1kA 279 1.156 a.100.1.12,c.2.1.6 132772,132773 1bg6 359 1.229 1nvtA 287 1.474 c.2.1.7,c.58.1.5 86270,86271 1luaA 287 1.518 c.2.1.7,c.58.1.4 78216,78217 1npyA 271 1.707 c.2.1.7,c.58.1.5 85995,85996 2cdcA 366 1.708 2h78A 302 1.725 2ahrA 259 1.818 a.100.1.10,c.2.1.6 126775,126776 2ew2A 316 1.854 1uufA 369 1.961 b.35.1.2,c.2.1.1 100006,100007 1f8fA 371 2.183 b.35.1.2,c.2.1.1 83246,83247 2cf5A 357 2.272 1vi2A 300 2.273 c.2.1.7,c.58.1.5 100726,100727 1bg6A 359 2.370 a.100.1.5,c.2.1.6 18810,30214 1vj0A 380 2.433 b.35.1.2,c.2.1.1 100786,100787 2pgd 482 2.825 1lluA 342 3.021 b.35.1.2,c.2.1.1 91064,91065 2izzA 322 3.060 2g5cA 281 3.081 a.100.1.12,c.2.1.6 134646,134647 1yqdA 366 3.202 1y9aA 360 3.326 1ks9A 291 3.389 a.100.1.7,c.2.1.6 68857,68858 1pl8A 356 3.465 b.35.1.2,c.2.1.1 94878,94879 1yqgA 263 3.511 1u3wA 374 3.710 b.35.1.2,c.2.1.1 113013,113014 2hcyA 347 3.798 1evyA 366 4.315 a.100.1.6,c.2.1.6 18811,30215 2dvmA 439 4.357 3c24A 286 4.376 1ff9A 450 4.459 c.2.1.3,d.81.1.2 30039,39954 1jqbA 351 4.642 b.35.1.2,c.2.1.1 77151,77152 1p0fA 373 4.664 b.35.1.2,c.2.1.1 87642,87643 1jayA 212 4.930 c.2.1.6 66478 3grs 478 5.168 1qmgA 524 5.626 a.100.1.2,c.2.1.6 18785,30182 2p4qA 497 5.654 2pv7A 298 6.046 3ladA 476 6.061 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1pgjA 478 6.160 a.100.1.1,c.2.1.6 18783,30195 1qorA 327 6.225 b.35.1.2,c.2.1.1 24766,29782 1zmdA 474 6.350 1kevA 351 6.391 b.35.1.2,c.2.1.1 24749,29765 1d7yA 408 6.556 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1gesA 450 6.660 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1iz0A 302 6.680 b.35.1.2,c.2.1.1 83821,83822 2b5wA 357 6.807 1z82A 335 6.872 2eihA 343 7.033 1h2bA 359 7.503 b.35.1.2,c.2.1.1 90543,90544 1n8kA 374 7.592 b.35.1.2,c.2.1.1 80298,80299 2gptA 523 7.991 1i36A 264 8.218 a.100.1.8,c.2.1.6 71108,71109 2d8aA 348 8.483 2cvzA 289 8.551 a.100.1.1,c.2.1.6 130890,130891 2graA 277 8.569 2o3jA 481 8.755 1pvvA 315 8.798 c.78.1.1,c.78.1.1 95190,95191 1hyuA 521 9.089 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2ohxA 374 9.613 b.35.1.2,c.2.1.1 24669,29685 1othA 321 10.07 c.78.1.1,c.78.1.1 35260,35261 1txgA 335 10.18 a.100.1.6,c.2.1.6 112775,112776 1fl2A 310 10.58 c.3.1.5,c.3.1.5 59869,59870 2pgdA 482 10.69 a.100.1.1,c.2.1.6 18778,30190 1mo9A 523 10.82 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1ps9A 671 11.36 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1kyqA 274 11.59 c.2.1.11,e.37.1.1 73281,73282 2a4kA 263 11.63 c.2.1.2 126156 1f0yA 302 12.19 a.100.1.3,c.2.1.6 18793,30197 1dliA 402 12.22 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2o7sA 523 12.26 1xhcA 367 13.53 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1kolA 398 13.63 b.35.1.2,c.2.1.1 77474,77475 2hmvA 144 13.64 c.2.1.9 136615 1jvbA 347 14.12 b.35.1.2,c.2.1.1 77181,77182 1enp 312 14.53 1g0oA 283 14.72 c.2.1.2 60181 1zcjA 463 14.83 1q1rA 431 15.61 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2gqwA 408 16.11 1mv8A 436 16.46 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dljA 402 16.71 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1cjcA 460 17.06 c.3.1.1,c.4.1.1 30319,30604 2ouiA 360 17.30 1yb4A 295 17.39 1zejA 293 17.61 2q0lA 311 18.60 1yb1A 272 18.66 c.2.1.2 116599 1trb 320 18.69 1lsuA 147 21.11 c.2.1.9 74250 1zk7A 467 21.34 2h6eA 344 21.66 2jahA 247 22.75 1yb5A 351 24.23 b.35.1.2,c.2.1.1 116601,116602 1gu7A 364 24.29 b.35.1.2,c.2.1.1 83321,83322 2c0cA 362 24.81 1vl6A 388 25.13 c.2.1.7,c.58.1.3 108724,108725 2tmdA 729 25.28 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 3c85A 183 25.30 1h7wA 1025 25.40 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2j3hA 345 25.66 1xseA 295 26.21 c.2.1.2 115925 2v3aA 384 26.25 1b3bA 415 26.45 c.2.1.7,c.58.1.1 30244,33892 1lssA 140 26.65 c.2.1.9 74246 2dpoA 319 26.90 1hrdA 449 27.05 c.2.1.7,c.58.1.1 30219,33867 1d7oA 297 27.77 c.2.1.2 29907 1ydeA 270 27.81 c.2.1.2 122980 1hwxA 501 28.12 c.2.1.7,c.58.1.1 30250,33898 1tt7A 330 28.28 b.35.1.2,c.2.1.1 112623,112624 1yxmA 303 28.52 c.2.1.2 124192 1xa0A 328 28.58 b.35.1.2,c.2.1.1 115021,115022 1y5mA 276 28.83 c.2.1.2 122645 1k2wA 256 28.93 c.2.1.2 90927 1o94A 729 29.20 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1fecA 490 30.33 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1uluA 261 30.55 c.2.1.2 113292 1tltA 319 30.67 c.2.1.3,d.81.1.5 107135,107136 2axqA 467 30.69 1xu9A 286 30.77 c.2.1.2 116052 2v6oA 596 31.63 1nvmB 312 32.11 c.2.1.3,d.81.1.1 86251,86252 1bdbA 277 32.19 c.2.1.2 29874 1s6yA 450 32.39 c.2.1.5,d.162.1.2 105314,105315 1wlyA 333 32.56 2d1yA 256 32.62 c.2.1.2 131151 2g1uA 155 32.69 2c07A 285 33.05 c.2.1.2 129577 1xeaA 323 33.70 c.2.1.3,d.81.1.5 109572,109573 2rcyA 262 33.90 1trbA 320 33.93 c.3.1.5,c.3.1.5 30529,30530 2h7mA 269 34.22 c.2.1.2 136219 1dhr 241 34.92 1h6vA 499 35.19 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 2r9zA 463 35.21 2qytA 317 35.43 1vl8A 267 35.52 c.2.1.2 108733 2nm0A 253 35.53 1o89A 345 35.72 b.35.1.2,c.2.1.1 92644,92645 1o5iA 249 37.13 c.2.1.2 92499 2dm6A 333 37.64 b.35.1.2,c.2.1.1 131567,131568 1q7bA 244 37.73 c.2.1.2 96026 2p91A 285 37.83 1m6iA 493 37.85 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1ooeA 236 38.57 c.2.1.2 87196 2gdzA 267 39.00 c.2.1.2 135043 1zemA 262 39.32 c.2.1.2 124984 2ae2A 260 39.54 c.2.1.2 29945 2ew8A 249 39.73 c.2.1.2 132447 1zbqA 327 39.75 c.2.1.2 124862 1nffA 260 40.13 c.2.1.2 80457 2bgkA 278 40.59 c.2.1.2 128480 1xg5A 279 40.75 c.2.1.2 115277 1uzmA 247 40.79 c.2.1.2 119811 1up7A 417 40.90 c.2.1.5,d.162.1.2 113374,113375 1e6wA 260 41.32 c.2.1.2 59326 3grsA 478 41.44 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1hdcA 253 41.52 c.2.1.2 29862 2pnfA 248 42.20 1qo8A 566 42.48 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1pjqA 457 42.96 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1hdoA 206 43.13 c.2.1.2 60965 2jfgA 445 43.20 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1xdzA 240 43.24 c.66.1.20 115196 2pd6A 264 43.65 1xhlA 297 44.36 c.2.1.2 109591 1cydA 244 44.36 c.2.1.2 29825 2zbwA 335 44.92 2ag5A 246 45.36 c.2.1.2 126719 1w4xA 542 45.41 c.3.1.5,c.3.1.5 109171,109172 1hxhA 253 45.61 c.2.1.2 76725 1x7gA 261 45.72 c.2.1.2 114929 1b26A 416 46.19 c.2.1.7,c.58.1.1 30232,33880 1zsyA 357 46.41 1nhpA 447 47.28 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1vjtA 483 47.74 c.2.1.5,d.162.1.2 100833,100834 2iidA 498 47.82 c.3.1.2,d.16.1.5 137426,137427 1ml4A 308 48.17 c.78.1.1,c.78.1.1 79255,79256 2hq1A 247 48.38 1uh5A 329 48.55 c.2.1.2 107840 1xdiA 499 49.67 c.3.1.5,d.87.1.1 115160,115161 1iy8A 267 49.80 c.2.1.2 83774 1nhsA 447 50.07 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1djqA 729 50.70 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1bgvA 449 51.50 c.2.1.7,c.58.1.1 30217,33865 1bdb 277 51.57 1obbA 480 52.41 c.2.1.5,d.162.1.2 86760,86761 2o23A 265 52.41 c.2.1.2 138884 1h5qA 265 52.68 c.2.1.2 60643 1xtpA 254 52.81 c.66.1.42 116031 1nhp 447 52.86 1ja9A 274 52.90 c.2.1.2 62817 1wmaA 276 53.59 c.2.1.2 121042 1reoA 486 53.69 c.3.1.2,d.16.1.5 97325,97326 1gegA 256 55.17 c.2.1.2 29888 1w6uA 302 55.56 c.2.1.2 114288 2cduA 452 56.15 1x1eA 239 57.33 1qsgA 265 58.73 c.2.1.2 29935 3cox 507 58.81 2aefA 234 59.58 3ceaA 346 60.08 1n5dA 288 61.23 c.2.1.2 80030 1vqwA 457 61.55 c.3.1.5,c.3.1.5 114028,114029 1yb2A 275 61.92 c.66.1.13 122868 1pzgA 331 62.02 c.2.1.5,d.162.1.1 95425,95426 1u8xX 472 63.47 c.2.1.5,d.162.1.2 107741,107742 2fwmX 250 64.42 2qq5A 260 65.48 1lvlA 458 66.01 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2qfmA 364 66.17 1b16A 254 66.50 c.2.1.2 29875 2o2yA 349 66.84 c.2.1.2 138894 1f8rA 498 67.30 c.3.1.2,d.16.1.5 30410,37974 2bi7A 384 67.60 2glxA 332 67.84 1up6A 416 67.93 c.2.1.5,d.162.1.2 107976,107977 1fmcA 255 68.18 c.2.1.2 29856 1id1A 153 69.49 c.2.1.9 62286 2jhfA 374 69.76 b.35.1.2,c.2.1.1 138314,138315 1x1tA 260 70.28 c.2.1.2 121597 1b4vA 504 70.79 c.3.1.2,d.16.1.1 30334,37865 2cvjA 180 72.79 1i1nA 226 73.76 c.66.1.7 71102 1zk4A 251 74.40 c.2.1.2 125176 1sbyA 254 74.92 c.2.1.2 118930 1eyzA 392 76.90 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1jg1A 235 77.41 c.66.1.7 66661 2cfcA 250 77.79 2dtxA 264 79.29 2yquA 455 80.56 2i76A 276 80.73 2pjdA 343 81.69 1xkqA 280 82.61 c.2.1.2 115417 1ykjA 394 82.67 1kpgA 287 83.69 c.66.1.18 68735 3cc8A 230 83.95 1kjqA 391 84.05 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1geeA 261 84.59 c.2.1.2 90509 1duvG 333 85.38 c.78.1.1,c.78.1.1 35228,35229 2jaeA 489 85.54 2dknA 255 85.60 1cf2O 337 86.69 c.2.1.3,d.81.1.1 29994,39909 2z1nA 260 86.72 1d5tA 433 86.76 c.3.1.3,d.16.1.6 30422,37986 2ef0A 301 87.09 1yqzA 438 87.78 1gtmA 419 89.21 c.2.1.7,c.58.1.1 30223,33871