# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c2xA 281 8.03e-06 2eklA 313 2.72e-05 1ygyA 529 2.88e-05 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2gcgA 330 3.11e-05 2cukA 311 3.24e-05 2g76A 335 3.88e-05 1gdhA 320 3.91e-05 c.2.1.4,c.23.12.1 30095,31355 1b0aA 288 4.02e-05 c.2.1.7,c.58.1.2 30286,33934 2pi1A 334 5.49e-05 1psdA 409 5.53e-05 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2nacA 393 5.70e-05 c.2.1.4,c.23.12.1 30088,31348 1wwkA 307 5.90e-05 2dbqA 334 6.19e-05 1j4aA 333 8.80e-05 c.2.1.4,c.23.12.1 71502,71503 1dxyA 333 9.44e-05 c.2.1.4,c.23.12.1 30094,31354 1a4iA 301 9.46e-05 c.2.1.7,c.58.1.2 30278,33926 1mx3A 347 0.000101 c.2.1.4,c.23.12.1 79638,79639 2fssA 365 0.000136 2j6iA 364 0.000140 2d0iA 333 0.000146 1dxy 333 0.000153 1sc6A 404 0.000153 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1xdwA 331 0.000154 2vojA 371 0.000157 1qp8A 303 0.000163 c.2.1.4,c.23.12.1 30092,31352 1edzA 320 0.000212 c.2.1.7,c.58.1.2 30287,33935 2vhxA 377 0.000303 1li4A 432 0.000356 c.2.1.4,c.23.12.3 84616,84617 2o4cA 380 0.000371 1v8bA 479 0.000390 c.2.1.4,c.23.12.3 113564,113565 2qrlA 394 0.000528 1xwfA 431 0.000602 c.2.1.4,c.23.12.3 122392,122393 1d4fA 431 0.000785 c.2.1.4,c.23.12.3 30110,31370 1pjcA 361 0.006492 c.2.1.4,c.23.12.2 30101,31361 1gpjA 404 0.1031 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1lehA 364 0.1056 c.2.1.7,c.58.1.1 30268,33916 1l7dA 384 0.1271 c.2.1.4,c.23.12.2 77774,77775 1x7dA 350 0.1688 c.2.1.13 114927 1x13A 401 0.2518 2hk9A 275 0.2926 1vllA 334 0.4177 c.2.1.13 108834 1p77A 272 0.4182 c.2.1.7,c.58.1.5 94214,94215 1nytA 271 0.4740 c.2.1.7,c.58.1.5 86417,86418 2nloA 302 0.7428 1np3A 338 0.8690 a.100.1.2,c.2.1.6 85946,85947 1vpdA 299 1.072 a.100.1.1,c.2.1.6 113951,113952 1c1dA 355 1.155 c.2.1.7,c.58.1.1 30270,33918 2d5cA 263 1.221 1yrlA 491 1.495 2eggA 297 1.515 1omoA 322 1.667 c.2.1.13 104017 1e3jA 352 2.025 b.35.1.2,c.2.1.1 24765,29781 1nvtA 287 2.166 c.2.1.7,c.58.1.5 86270,86271 2f1kA 279 2.248 a.100.1.12,c.2.1.6 132772,132773 1uufA 369 2.732 b.35.1.2,c.2.1.1 100006,100007 1npyA 271 3.023 c.2.1.7,c.58.1.5 85995,85996 2cdcA 366 3.114 2ahrA 259 3.398 a.100.1.10,c.2.1.6 126775,126776 2ew2A 316 3.565 1luaA 287 3.677 c.2.1.7,c.58.1.4 78216,78217 1f8fA 371 3.810 b.35.1.2,c.2.1.1 83246,83247 1u3wA 374 4.200 b.35.1.2,c.2.1.1 113013,113014 1pl8A 356 4.795 b.35.1.2,c.2.1.1 94878,94879 1y9aA 360 4.856 2cf5A 357 5.105 2dvmA 439 5.334 1bg6 359 5.589 2g5cA 281 5.605 a.100.1.12,c.2.1.6 134646,134647 1ks9A 291 5.626 a.100.1.7,c.2.1.6 68857,68858 1jqbA 351 5.714 b.35.1.2,c.2.1.1 77151,77152 1h2bA 359 6.065 b.35.1.2,c.2.1.1 90543,90544 2b5wA 357 6.103 2pgd 482 6.435 2izzA 322 6.562 1vi2A 300 6.754 c.2.1.7,c.58.1.5 100726,100727 1evyA 366 6.801 a.100.1.6,c.2.1.6 18811,30215 1bg6A 359 6.819 a.100.1.5,c.2.1.6 18810,30214 1kevA 351 6.834 b.35.1.2,c.2.1.1 24749,29765 1yqgA 263 6.974 1vj0A 380 7.008 b.35.1.2,c.2.1.1 100786,100787 1jayA 212 7.034 c.2.1.6 66478 1p0fA 373 7.089 b.35.1.2,c.2.1.1 87642,87643 2h78A 302 7.155 2pv7A 298 8.545 1n8kA 374 9.094 b.35.1.2,c.2.1.1 80298,80299 1lluA 342 9.199 b.35.1.2,c.2.1.1 91064,91065 1pgjA 478 9.677 a.100.1.1,c.2.1.6 18783,30195 1iz0A 302 10.25 b.35.1.2,c.2.1.1 83821,83822 2graA 277 10.51 1yqdA 366 10.69 1hyuA 521 10.71 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 3c24A 286 10.86 1qorA 327 11.18 b.35.1.2,c.2.1.1 24766,29782 1kyqA 274 11.99 c.2.1.11,e.37.1.1 73281,73282 2ohxA 374 12.41 b.35.1.2,c.2.1.1 24669,29685 2eihA 343 12.48 2hcyA 347 12.57 2d8aA 348 12.98 1qmgA 524 13.61 a.100.1.2,c.2.1.6 18785,30182 1gesA 450 14.04 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2h6eA 344 14.28 1jvbA 347 14.38 b.35.1.2,c.2.1.1 77181,77182 3grs 478 15.33 1d7yA 408 15.36 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2gptA 523 16.39 1z82A 335 16.43 1txgA 335 16.44 a.100.1.6,c.2.1.6 112775,112776 1cjcA 460 17.28 c.3.1.1,c.4.1.1 30319,30604 2cvzA 289 18.24 a.100.1.1,c.2.1.6 130890,130891 1kolA 398 18.42 b.35.1.2,c.2.1.1 77474,77475 2p4qA 497 18.49 3ladA 476 18.73 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1mo9A 523 18.81 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2a4kA 263 19.26 c.2.1.2 126156 2hmvA 144 20.40 c.2.1.9 136615 1fl2A 310 21.06 c.3.1.5,c.3.1.5 59869,59870 2o3jA 481 21.11 1xhcA 367 21.55 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1lsuA 147 21.75 c.2.1.9 74250 2pgdA 482 22.46 a.100.1.1,c.2.1.6 18778,30190 1zcjA 463 23.15 2o7sA 523 23.33 1i36A 264 23.57 a.100.1.8,c.2.1.6 71108,71109 1enp 312 23.66 1q1rA 431 23.71 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1ff9A 450 24.12 c.2.1.3,d.81.1.2 30039,39954 1hrdA 449 24.61 c.2.1.7,c.58.1.1 30219,33867 2ouiA 360 25.05 1g0oA 283 26.07 c.2.1.2 60181 1dliA 402 26.22 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 27.03 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1f0yA 302 27.91 a.100.1.3,c.2.1.6 18793,30197 2gqwA 408 28.69 1hwxA 501 29.19 c.2.1.7,c.58.1.1 30250,33898 1b26A 416 30.39 c.2.1.7,c.58.1.1 30232,33880 1ps9A 671 31.55 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2g1uA 155 31.96 1b3bA 415 32.77 c.2.1.7,c.58.1.1 30244,33892 1gu7A 364 32.98 b.35.1.2,c.2.1.1 83321,83322 1lssA 140 34.51 c.2.1.9 74246 1tt7A 330 36.90 b.35.1.2,c.2.1.1 112623,112624 2q0lA 311 38.15 1bgvA 449 38.46 c.2.1.7,c.58.1.1 30217,33865 1yb5A 351 39.61 b.35.1.2,c.2.1.1 116601,116602 1d7oA 297 40.09 c.2.1.2 29907 1o89A 345 40.33 b.35.1.2,c.2.1.1 92644,92645 1zejA 293 40.71 1zk7A 467 40.72 2dpoA 319 41.15 1yb1A 272 41.32 c.2.1.2 116599 1vl6A 388 42.04 c.2.1.7,c.58.1.3 108724,108725 3cox 507 42.39 2j3hA 345 42.42 1fecA 490 42.79 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1tltA 319 44.02 c.2.1.3,d.81.1.5 107135,107136 1yxmA 303 44.16 c.2.1.2 124192 1wlyA 333 44.63 1qo8A 566 46.23 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1mv8A 436 46.27 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1hdoA 206 47.17 c.2.1.2 60965 2jahA 247 47.48 1trb 320 48.19 2v3aA 384 48.30 2ag5A 246 48.46 c.2.1.2 126719 2zbwA 335 48.62 1o94A 729 48.95 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 2rcyA 262 49.31 1h7wA 1025 49.41 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1dhr 241 49.70 2tmdA 729 49.81 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1k2wA 256 50.47 c.2.1.2 90927 1zbqA 327 51.62 c.2.1.2 124862 1xtpA 254 51.72 c.66.1.42 116031 1s6yA 450 52.28 c.2.1.5,d.162.1.2 105314,105315 1y5mA 276 52.30 c.2.1.2 122645 1vl8A 267 53.53 c.2.1.2 108733 1uzmA 247 54.05 c.2.1.2 119811 2nm0A 253 54.12 1b5qA 472 54.35 c.3.1.2,d.16.1.5 30404,37968 2ew8A 249 54.40 c.2.1.2 132447 1o5iA 249 54.44 c.2.1.2 92499 1xu9A 286 55.84 c.2.1.2 116052 1ooeA 236 56.79 c.2.1.2 87196 2c0cA 362 57.00 3c85A 183 57.11 2axqA 467 57.99 2yquA 455 58.89 1trbA 320 58.91 c.3.1.5,c.3.1.5 30529,30530 1ydeA 270 59.81 c.2.1.2 122980 1xseA 295 60.68 c.2.1.2 115925 2pnfA 248 61.02 1uh5A 329 61.22 c.2.1.2 107840 1bdbA 277 61.27 c.2.1.2 29874 2ekpA 239 61.60 2gdzA 267 61.82 c.2.1.2 135043 1uluA 261 61.85 c.2.1.2 113292 2qytA 317 62.75 1zmdA 474 63.37 2jhfA 374 64.00 b.35.1.2,c.2.1.1 138314,138315 1nffA 260 64.26 c.2.1.2 80457 1xdzA 240 66.79 c.66.1.20 115196 1nvmB 312 67.07 c.2.1.3,d.81.1.1 86251,86252 2hq1A 247 67.97 1h5qA 265 69.16 c.2.1.2 60643 2h7mA 269 69.71 c.2.1.2 136219 1zsyA 357 69.89 1m6iA 493 70.00 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2bgkA 278 70.28 c.2.1.2 128480 2p91A 285 70.96 2c07A 285 71.08 c.2.1.2 129577 2ae2A 260 71.56 c.2.1.2 29945 1h6vA 499 71.96 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1hxhA 253 72.35 c.2.1.2 76725 1yb4A 295 72.44 2d1yA 256 73.29 c.2.1.2 131151 1e6wA 260 73.67 c.2.1.2 59326 1cydA 244 74.24 c.2.1.2 29825 2fwmX 250 74.30 1ja9A 274 74.86 c.2.1.2 62817 2iidA 498 75.71 c.3.1.2,d.16.1.5 137426,137427 1hdcA 253 76.01 c.2.1.2 29862 1nhp 447 77.13 2i76A 276 77.22 1xa0A 328 78.74 b.35.1.2,c.2.1.1 115021,115022 1w6uA 302 78.77 c.2.1.2 114288 2pd6A 264 80.21 1pjqA 457 80.47 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1othA 321 80.55 c.78.1.1,c.78.1.1 35260,35261 1zemA 262 80.68 c.2.1.2 124984 2dtxA 264 81.37 1q7bA 244 83.30 c.2.1.2 96026 1qsgA 265 83.54 c.2.1.2 29935 1up7A 417 84.00 c.2.1.5,d.162.1.2 113374,113375 2jfgA 445 84.71 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2v6oA 596 85.44 1f8rA 498 86.89 c.3.1.2,d.16.1.5 30410,37974 2cduA 452 87.40 2o23A 265 89.43 c.2.1.2 138884 1yb2A 275 89.49 c.66.1.13 122868