# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c2xA 281 3.12e-07 2gcgA 330 1.89e-06 2g76A 335 1.94e-06 1ygyA 529 2.00e-06 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2eklA 313 2.04e-06 2cukA 311 2.23e-06 1b0aA 288 2.24e-06 c.2.1.7,c.58.1.2 30286,33934 1gdhA 320 2.69e-06 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 3.23e-06 c.2.1.4,c.23.12.1 30088,31348 1wwkA 307 3.54e-06 2pi1A 334 4.12e-06 1psdA 409 4.16e-06 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2dbqA 334 5.05e-06 1a4iA 301 5.55e-06 c.2.1.7,c.58.1.2 30278,33926 1mx3A 347 7.37e-06 c.2.1.4,c.23.12.1 79638,79639 1j4aA 333 8.25e-06 c.2.1.4,c.23.12.1 71502,71503 2vojA 371 9.75e-06 1dxyA 333 1.13e-05 c.2.1.4,c.23.12.1 30094,31354 1sc6A 404 1.18e-05 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2j6iA 364 1.22e-05 2fssA 365 1.25e-05 2d0iA 333 1.29e-05 1dxy 333 1.44e-05 1xdwA 331 1.47e-05 1qp8A 303 1.86e-05 c.2.1.4,c.23.12.1 30092,31352 1edzA 320 2.12e-05 c.2.1.7,c.58.1.2 30287,33935 2vhxA 377 2.46e-05 1li4A 432 3.20e-05 c.2.1.4,c.23.12.3 84616,84617 2o4cA 380 3.52e-05 1v8bA 479 4.54e-05 c.2.1.4,c.23.12.3 113564,113565 1xwfA 431 5.28e-05 c.2.1.4,c.23.12.3 122392,122393 2qrlA 394 6.68e-05 1d4fA 431 8.63e-05 c.2.1.4,c.23.12.3 30110,31370 1pjcA 361 0.000728 c.2.1.4,c.23.12.2 30101,31361 1l7dA 384 0.01095 c.2.1.4,c.23.12.2 77774,77775 1lehA 364 0.01519 c.2.1.7,c.58.1.1 30268,33916 1gpjA 404 0.02668 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1x13A 401 0.03807 1x7dA 350 0.06390 c.2.1.13 114927 2hk9A 275 0.1347 1p77A 272 0.1656 c.2.1.7,c.58.1.5 94214,94215 1vllA 334 0.2030 c.2.1.13 108834 1nytA 271 0.2187 c.2.1.7,c.58.1.5 86417,86418 1np3A 338 0.2683 a.100.1.2,c.2.1.6 85946,85947 1c1dA 355 0.2939 c.2.1.7,c.58.1.1 30270,33918 1vpdA 299 0.3122 a.100.1.1,c.2.1.6 113951,113952 2nloA 302 0.4360 2d5cA 263 0.4396 1yrlA 491 0.4780 1e3jA 352 0.6511 b.35.1.2,c.2.1.1 24765,29781 2f1kA 279 0.6759 a.100.1.12,c.2.1.6 132772,132773 1omoA 322 0.6789 c.2.1.13 104017 2ahrA 259 0.8722 a.100.1.10,c.2.1.6 126775,126776 2eggA 297 0.8968 1uufA 369 0.995 b.35.1.2,c.2.1.1 100006,100007 1nvtA 287 1.283 c.2.1.7,c.58.1.5 86270,86271 2cdcA 366 1.324 1bg6 359 1.326 2cf5A 357 1.398 2h78A 302 1.444 2ew2A 316 1.551 3c24A 286 1.587 1yqdA 366 1.729 1f8fA 371 1.733 b.35.1.2,c.2.1.1 83246,83247 1jqbA 351 1.770 b.35.1.2,c.2.1.1 77151,77152 1luaA 287 1.814 c.2.1.7,c.58.1.4 78216,78217 1vj0A 380 1.917 b.35.1.2,c.2.1.1 100786,100787 1y9aA 360 1.950 1npyA 271 1.957 c.2.1.7,c.58.1.5 85995,85996 1kevA 351 2.004 b.35.1.2,c.2.1.1 24749,29765 2g5cA 281 2.099 a.100.1.12,c.2.1.6 134646,134647 1pl8A 356 2.107 b.35.1.2,c.2.1.1 94878,94879 1vi2A 300 2.114 c.2.1.7,c.58.1.5 100726,100727 1lluA 342 2.206 b.35.1.2,c.2.1.1 91064,91065 1u3wA 374 2.236 b.35.1.2,c.2.1.1 113013,113014 1bg6A 359 2.284 a.100.1.5,c.2.1.6 18810,30214 2dvmA 439 2.416 2pgd 482 2.459 2izzA 322 2.610 1ks9A 291 2.619 a.100.1.7,c.2.1.6 68857,68858 1h2bA 359 2.812 b.35.1.2,c.2.1.1 90543,90544 2hcyA 347 2.862 1n8kA 374 3.128 b.35.1.2,c.2.1.1 80298,80299 1p0fA 373 3.157 b.35.1.2,c.2.1.1 87642,87643 1evyA 366 3.175 a.100.1.6,c.2.1.6 18811,30215 2b5wA 357 3.338 1jayA 212 3.759 c.2.1.6 66478 1yqgA 263 3.835 2d8aA 348 3.991 2pv7A 298 4.170 1iz0A 302 4.689 b.35.1.2,c.2.1.1 83821,83822 2h6eA 344 5.003 1ff9A 450 5.064 c.2.1.3,d.81.1.2 30039,39954 1qorA 327 5.110 b.35.1.2,c.2.1.1 24766,29782 2graA 277 5.137 2gptA 523 5.262 1pgjA 478 5.596 a.100.1.1,c.2.1.6 18783,30195 1qmgA 524 5.928 a.100.1.2,c.2.1.6 18785,30182 1kyqA 274 5.959 c.2.1.11,e.37.1.1 73281,73282 2eihA 343 5.963 2cvzA 289 6.153 a.100.1.1,c.2.1.6 130890,130891 1gesA 450 6.366 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2ohxA 374 6.393 b.35.1.2,c.2.1.1 24669,29685 1d7yA 408 6.421 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 3grs 478 6.527 3ladA 476 7.290 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1mo9A 523 7.927 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1z82A 335 8.009 1txgA 335 8.047 a.100.1.6,c.2.1.6 112775,112776 2ouiA 360 8.115 2a4kA 263 8.309 c.2.1.2 126156 2p4qA 497 8.664 1hyuA 521 8.753 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1kolA 398 9.431 b.35.1.2,c.2.1.1 77474,77475 1jvbA 347 9.610 b.35.1.2,c.2.1.1 77181,77182 2hmvA 144 9.830 c.2.1.9 136615 1lsuA 147 10.61 c.2.1.9 74250 1i36A 264 10.94 a.100.1.8,c.2.1.6 71108,71109 1enp 312 11.04 1zcjA 463 11.11 1g0oA 283 11.19 c.2.1.2 60181 2pgdA 482 11.69 a.100.1.1,c.2.1.6 18778,30190 1fl2A 310 12.04 c.3.1.5,c.3.1.5 59869,59870 2o7sA 523 12.92 1dliA 402 14.26 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1f0yA 302 14.27 a.100.1.3,c.2.1.6 18793,30197 1q1rA 431 14.89 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2jhfA 374 15.25 b.35.1.2,c.2.1.1 138314,138315 2gqwA 408 15.49 1mv8A 436 15.72 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2dpoA 319 16.19 1gu7A 364 16.21 b.35.1.2,c.2.1.1 83321,83322 1othA 321 16.50 c.78.1.1,c.78.1.1 35260,35261 1dljA 402 16.88 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1lssA 140 17.28 c.2.1.9 74246 2o3jA 481 17.46 1trb 320 18.00 1pvvA 315 18.00 c.78.1.1,c.78.1.1 95190,95191 1d7oA 297 18.23 c.2.1.2 29907 1hrdA 449 18.28 c.2.1.7,c.58.1.1 30219,33867 1yb5A 351 18.34 b.35.1.2,c.2.1.1 116601,116602 1ps9A 671 18.45 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1cjcA 460 18.57 c.3.1.1,c.4.1.1 30319,30604 1zk7A 467 19.36 1tt7A 330 19.82 b.35.1.2,c.2.1.1 112623,112624 2g1uA 155 21.58 1yb1A 272 21.62 c.2.1.2 116599 2yquA 455 21.69 1uluA 261 21.93 c.2.1.2 113292 1zejA 293 22.42 1dhr 241 22.57 3c85A 183 22.60 1y5mA 276 22.91 c.2.1.2 122645 1wlyA 333 23.02 2jahA 247 23.14 1b3bA 415 23.23 c.2.1.7,c.58.1.1 30244,33892 1ooeA 236 23.27 c.2.1.2 87196 1ja9A 274 24.44 c.2.1.2 62817 1xu9A 286 24.66 c.2.1.2 116052 1xhcA 367 25.05 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1hwxA 501 25.07 c.2.1.7,c.58.1.1 30250,33898 2q0lA 311 25.23 1yb4A 295 25.90 1h7wA 1025 26.20 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1b26A 416 26.22 c.2.1.7,c.58.1.1 30232,33880 1tltA 319 26.39 c.2.1.3,d.81.1.5 107135,107136 1xseA 295 26.60 c.2.1.2 115925 1yxmA 303 26.63 c.2.1.2 124192 2v3aA 384 26.82 1zmdA 474 27.18 1vl6A 388 27.24 c.2.1.7,c.58.1.3 108724,108725 2h7mA 269 27.40 c.2.1.2 136219 1fecA 490 27.48 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2c0cA 362 28.39 1bdbA 277 28.49 c.2.1.2 29874 1uh5A 329 28.56 c.2.1.2 107840 2aefA 234 28.63 2ag5A 246 29.17 c.2.1.2 126719 1vl8A 267 29.36 c.2.1.2 108733 1ydeA 270 29.44 c.2.1.2 122980 2axqA 467 29.65 1xeaA 323 30.18 c.2.1.3,d.81.1.5 109572,109573 2j3hA 345 30.54 2pnfA 248 30.78 1zbqA 327 30.89 c.2.1.2 124862 2ew8A 249 31.75 c.2.1.2 132447 1qsgA 265 31.81 c.2.1.2 29935 1o5iA 249 32.07 c.2.1.2 92499 2rcyA 262 32.25 1k2wA 256 32.82 c.2.1.2 90927 1pjqA 457 33.73 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2d1yA 256 33.89 c.2.1.2 131151 1qo8A 566 34.18 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1w6uA 302 35.73 c.2.1.2 114288 1wmaA 276 36.18 c.2.1.2 121042 1xa0A 328 37.03 b.35.1.2,c.2.1.1 115021,115022 2ekpA 239 37.23 2bgkA 278 37.55 c.2.1.2 128480 1nffA 260 38.02 c.2.1.2 80457 1gteA 1025 38.08 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2p91A 285 38.65 1o89A 345 39.95 b.35.1.2,c.2.1.1 92644,92645 1zemA 262 40.63 c.2.1.2 124984 1m6iA 493 40.70 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2jfgA 445 40.96 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2zbwA 335 41.05 1xhlA 297 41.33 c.2.1.2 109591 2tmdA 729 41.41 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1h5qA 265 41.74 c.2.1.2 60643 2c07A 285 42.05 c.2.1.2 129577 1zsyA 357 42.12 1xdzA 240 42.44 c.66.1.20 115196 1bdb 277 42.52 2ae2A 260 42.66 c.2.1.2 29945 2nm0A 253 42.67 1nvmB 312 43.10 c.2.1.3,d.81.1.1 86251,86252 2hq1A 247 43.98 1nhp 447 44.06 2v6oA 596 44.08 2gdzA 267 44.09 c.2.1.2 135043 1cydA 244 44.65 c.2.1.2 29825 1hdcA 253 44.82 c.2.1.2 29862 3cox 507 44.83 1hdoA 206 45.27 c.2.1.2 60965 2r9zA 463 45.52 1trbA 320 46.38 c.3.1.5,c.3.1.5 30529,30530 2qytA 317 47.04 2iidA 498 47.10 c.3.1.2,d.16.1.5 137426,137427 2gagA 965 48.62 1uzmA 247 48.91 c.2.1.2 119811 1jg1A 235 48.93 c.66.1.7 66661 1h6vA 499 49.56 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1iy8A 267 49.70 c.2.1.2 83774 3grsA 478 49.80 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1q7bA 244 49.95 c.2.1.2 96026 1xtpA 254 50.53 c.66.1.42 116031 1x7gA 261 51.49 c.2.1.2 114929 1nhsA 447 52.21 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1s6yA 450 53.04 c.2.1.5,d.162.1.2 105314,105315 1ml4A 308 53.27 c.78.1.1,c.78.1.1 79255,79256 1w4xA 542 54.27 c.3.1.5,c.3.1.5 109171,109172 2i76A 276 54.63 1e6wA 260 54.63 c.2.1.2 59326 1bgvA 449 55.38 c.2.1.7,c.58.1.1 30217,33865 1yqzA 438 55.62 1xg5A 279 55.73 c.2.1.2 115277 2dtxA 264 56.12 2eq6A 464 56.69 2cduA 452 56.78 2o23A 265 57.51 c.2.1.2 138884 1yb2A 275 57.83 c.66.1.13 122868 1hxhA 253 57.84 c.2.1.2 76725 1nhpA 447 61.28 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1up7A 417 62.16 c.2.1.5,d.162.1.2 113374,113375 1x1tA 260 62.92 c.2.1.2 121597 2bi7A 384 63.02 2o2yA 349 63.24 c.2.1.2 138894 1o94A 729 63.40 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 3cc8A 230 63.63 1b5qA 472 64.79 c.3.1.2,d.16.1.5 30404,37968 1b4vA 504 64.93 c.3.1.2,d.16.1.1 30334,37865 2i6uA 307 66.22 2pd6A 264 66.42 1fmcA 255 67.02 c.2.1.2 29856 1b16A 254 67.09 c.2.1.2 29875 1d5tA 433 67.59 c.3.1.3,d.16.1.6 30422,37986 1zk4A 251 68.42 c.2.1.2 125176 1pzgA 331 68.83 c.2.1.5,d.162.1.1 95425,95426 1i1nA 226 69.93 c.66.1.7 71102 1xdiA 499 71.15 c.3.1.5,d.87.1.1 115160,115161 2cfcA 250 71.67 1geeA 261 73.20 c.2.1.2 90509 1x1eA 239 73.22 2fwmX 250 73.53 1uxjA 309 73.57 c.2.1.5,d.162.1.1 108112,108113 1gcoA 261 73.66 c.2.1.2 29884 1vid 221 74.11 1f06A 320 74.37 c.2.1.3,d.81.1.3 59556,59557 1djqA 729 75.42 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 2i6tA 303 75.49 1xkqA 280 75.55 c.2.1.2 115417 4uagA 437 77.15 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1lc0A 294 83.08 c.2.1.3,d.81.1.4 73823,73824 1gegA 256 83.29 c.2.1.2 29888 1reoA 486 83.83 c.3.1.2,d.16.1.5 97325,97326 2cvjA 180 85.66 2dm6A 333 85.83 b.35.1.2,c.2.1.1 131567,131568 2a9fA 398 85.89 1vj1A 363 85.99 b.35.1.2,c.2.1.1 100794,100795 1yovA 537 86.07 c.111.1.2 123785 1cf2O 337 86.15 c.2.1.3,d.81.1.1 29994,39909 1spxA 278 87.37 c.2.1.2 98958 1h1dA 221 87.48 c.66.1.1 83452 2glxA 332 88.75