# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c2xA 281 9.29e-05 1b0aA 288 0.000465 c.2.1.7,c.58.1.2 30286,33934 1wwkA 307 0.000537 1gdhA 320 0.000548 c.2.1.4,c.23.12.1 30095,31355 2g76A 335 0.000569 2eklA 313 0.000572 2cukA 311 0.000623 1a4iA 301 0.000624 c.2.1.7,c.58.1.2 30278,33926 2gcgA 330 0.000635 2nacA 393 0.000798 c.2.1.4,c.23.12.1 30088,31348 2pi1A 334 0.000813 1ygyA 529 0.000838 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1psdA 409 0.000924 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2dbqA 334 0.000957 1mx3A 347 0.000990 c.2.1.4,c.23.12.1 79638,79639 1j4aA 333 0.001338 c.2.1.4,c.23.12.1 71502,71503 1qp8A 303 0.001459 c.2.1.4,c.23.12.1 30092,31352 2j6iA 364 0.001520 2fssA 365 0.001719 1xdwA 331 0.001729 2vhxA 377 0.002124 2d0iA 333 0.002133 1dxy 333 0.002329 2vojA 371 0.002494 1dxyA 333 0.002805 c.2.1.4,c.23.12.1 30094,31354 2o4cA 380 0.003662 1sc6A 404 0.003681 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1v8bA 479 0.004762 c.2.1.4,c.23.12.3 113564,113565 1li4A 432 0.005116 c.2.1.4,c.23.12.3 84616,84617 1edzA 320 0.006257 c.2.1.7,c.58.1.2 30287,33935 2qrlA 394 0.008220 1xwfA 431 0.009337 c.2.1.4,c.23.12.3 122392,122393 1d4fA 431 0.01110 c.2.1.4,c.23.12.3 30110,31370 1pjcA 361 0.01392 c.2.1.4,c.23.12.2 30101,31361 1l7dA 384 0.0998 c.2.1.4,c.23.12.2 77774,77775 1lehA 364 0.3042 c.2.1.7,c.58.1.1 30268,33916 1x13A 401 0.3084 1x7dA 350 0.4514 c.2.1.13 114927 1gpjA 404 0.5660 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2hk9A 275 0.6923 1p77A 272 0.9028 c.2.1.7,c.58.1.5 94214,94215 2nloA 302 1.043 1nytA 271 1.113 c.2.1.7,c.58.1.5 86417,86418 1c1dA 355 1.255 c.2.1.7,c.58.1.1 30270,33918 1vpdA 299 1.527 a.100.1.1,c.2.1.6 113951,113952 1vllA 334 1.541 c.2.1.13 108834 2eggA 297 1.556 1yrlA 491 1.860 1omoA 322 2.097 c.2.1.13 104017 1np3A 338 2.657 a.100.1.2,c.2.1.6 85946,85947 2f1kA 279 3.354 a.100.1.12,c.2.1.6 132772,132773 2d5cA 263 3.366 1vi2A 300 3.456 c.2.1.7,c.58.1.5 100726,100727 1bg6 359 3.599 2pgd 482 5.690 1qmgA 524 5.774 a.100.1.2,c.2.1.6 18785,30182 2h78A 302 6.114 2ew2A 316 6.603 1npyA 271 6.865 c.2.1.7,c.58.1.5 85995,85996 1bg6A 359 6.999 a.100.1.5,c.2.1.6 18810,30214 1nvtA 287 7.013 c.2.1.7,c.58.1.5 86270,86271 2izzA 322 7.109 1ks9A 291 8.871 a.100.1.7,c.2.1.6 68857,68858 2dvmA 439 9.124 1jayA 212 9.127 c.2.1.6 66478 2a4kA 263 11.99 c.2.1.2 126156 1i36A 264 12.22 a.100.1.8,c.2.1.6 71108,71109 2cvzA 289 12.31 a.100.1.1,c.2.1.6 130890,130891 1e3jA 352 12.32 b.35.1.2,c.2.1.1 24765,29781 3c24A 286 12.86 1evyA 366 13.06 a.100.1.6,c.2.1.6 18811,30215 2g5cA 281 14.82 a.100.1.12,c.2.1.6 134646,134647 1zcjA 463 15.29 1z82A 335 15.30 2graA 277 15.32 2cdcA 366 15.70 2o3jA 481 17.03 1vl6A 388 17.41 c.2.1.7,c.58.1.3 108724,108725 2p4qA 497 17.56 1txgA 335 17.64 a.100.1.6,c.2.1.6 112775,112776 1dliA 402 17.77 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1f0yA 302 18.70 a.100.1.3,c.2.1.6 18793,30197 1vj0A 380 19.05 b.35.1.2,c.2.1.1 100786,100787 3ladA 476 19.15 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 3grs 478 19.20 1yqgA 263 20.73 1o5iA 249 21.17 c.2.1.2 92499 1u3wA 374 21.27 b.35.1.2,c.2.1.1 113013,113014 2pv7A 298 21.28 1yb4A 295 21.36 2pgdA 482 22.44 a.100.1.1,c.2.1.6 18778,30190 2ahrA 259 22.87 a.100.1.10,c.2.1.6 126775,126776 1luaA 287 23.44 c.2.1.7,c.58.1.4 78216,78217 1othA 321 25.05 c.78.1.1,c.78.1.1 35260,35261 1ff9A 450 25.36 c.2.1.3,d.81.1.2 30039,39954 1mo9A 523 25.79 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1yqdA 366 25.95 1uluA 261 26.26 c.2.1.2 113292 1hyuA 521 26.72 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1xa0A 328 27.16 b.35.1.2,c.2.1.1 115021,115022 2yquA 455 28.32 1p0fA 373 28.55 b.35.1.2,c.2.1.1 87642,87643 1b3bA 415 28.87 c.2.1.7,c.58.1.1 30244,33892 1xseA 295 29.35 c.2.1.2 115925 2gptA 523 29.48 1uzmA 247 30.70 c.2.1.2 119811 1nvmB 312 30.95 c.2.1.3,d.81.1.1 86251,86252 1trb 320 31.36 1dljA 402 31.60 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1lluA 342 32.48 b.35.1.2,c.2.1.1 91064,91065 2hcyA 347 32.49 1uufA 369 32.51 b.35.1.2,c.2.1.1 100006,100007 2nm0A 253 32.52 1o89A 345 32.54 b.35.1.2,c.2.1.1 92644,92645 1enp 312 32.89 1y5mA 276 33.56 c.2.1.2 122645 1tt7A 330 33.96 b.35.1.2,c.2.1.1 112623,112624 1g0oA 283 34.38 c.2.1.2 60181 1fl2A 310 36.66 c.3.1.5,c.3.1.5 59869,59870 1y9aA 360 37.14 1b26A 416 37.19 c.2.1.7,c.58.1.1 30232,33880 1yb1A 272 37.36 c.2.1.2 116599 1pvvA 315 37.73 c.78.1.1,c.78.1.1 95190,95191 1wmaA 276 38.22 c.2.1.2 121042 1ml4A 308 38.60 c.78.1.1,c.78.1.1 79255,79256 1qsgA 265 38.94 c.2.1.2 29935 1xhcA 367 39.91 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2h6eA 344 40.18 1pgjA 478 40.27 a.100.1.1,c.2.1.6 18783,30195 1ja9A 274 40.44 c.2.1.2 62817 1nffA 260 40.71 c.2.1.2 80457 1q7bA 244 40.77 c.2.1.2 96026 1zk7A 467 41.25 1b16A 254 41.27 c.2.1.2 29875 1xu9A 286 41.62 c.2.1.2 116052 1cydA 244 41.82 c.2.1.2 29825 2jahA 247 41.96 1zbqA 327 42.50 c.2.1.2 124862 1ydeA 270 43.06 c.2.1.2 122980 1d7yA 408 43.55 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2ae2A 260 43.68 c.2.1.2 29945 2ag5A 246 44.06 c.2.1.2 126719 1fecA 490 44.52 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1gesA 450 44.57 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1hdoA 206 44.79 c.2.1.2 60965 2cduA 452 44.89 2d1yA 256 44.92 c.2.1.2 131151 2eihA 343 45.20 2ef0A 301 45.37 2dtxA 264 45.48 1d7oA 297 45.77 c.2.1.2 29907 1n8kA 374 45.78 b.35.1.2,c.2.1.1 80298,80299 1fmcA 255 46.48 c.2.1.2 29856 2c07A 285 46.54 c.2.1.2 129577 1uxjA 309 46.85 c.2.1.5,d.162.1.1 108112,108113 1hdcA 253 46.86 c.2.1.2 29862 2c0cA 362 46.93 1h6vA 499 47.06 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1zejA 293 47.62 1hwxA 501 47.63 c.2.1.7,c.58.1.1 30250,33898 2cf5A 357 48.30 1s6yA 450 48.42 c.2.1.5,d.162.1.2 105314,105315 1h5qA 265 48.87 c.2.1.2 60643 1yxmA 303 48.95 c.2.1.2 124192 2eq6A 464 49.18 2r9zA 463 49.27 1jqbA 351 49.36 b.35.1.2,c.2.1.1 77151,77152 1f8fA 371 49.63 b.35.1.2,c.2.1.1 83246,83247 1k2wA 256 49.68 c.2.1.2 90927 1ps9A 671 50.47 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2gqwA 408 50.57 1zmdA 474 50.73 1pwxA 254 51.01 c.2.1.2 95262 1q1rA 431 51.03 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1x1eA 239 51.16 2jfgA 445 51.40 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1qorA 327 52.31 b.35.1.2,c.2.1.1 24766,29782 1xhlA 297 52.38 c.2.1.2 109591 2fwmX 250 52.75 2dpoA 319 52.84 1vl8A 267 54.67 c.2.1.2 108733 1zmtA 254 54.98 c.2.1.2 125363 1bdbA 277 55.05 c.2.1.2 29874 2gdzA 267 55.18 c.2.1.2 135043 2o7sA 523 55.61 2ew8A 249 55.92 c.2.1.2 132447 2ekpA 239 57.49 1pl8A 356 58.76 b.35.1.2,c.2.1.1 94878,94879 1zemA 262 59.21 c.2.1.2 124984 1w6uA 302 59.22 c.2.1.2 114288 1iy8A 267 59.97 c.2.1.2 83774 2a9fA 398 60.10 2rcyA 262 60.32 2ohxA 374 60.46 b.35.1.2,c.2.1.1 24669,29685 1h2bA 359 60.56 b.35.1.2,c.2.1.1 90543,90544 1n5dA 288 60.60 c.2.1.2 80030 2p91A 285 60.61 1zk4A 251 61.17 c.2.1.2 125176 6ldhA 329 61.47 c.2.1.5,d.162.1.1 30161,42128 1mv8A 436 62.16 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 3csuA 310 62.19 c.78.1.1,c.78.1.1 35094,35095 1dhr 241 62.59 3grsA 478 63.90 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2bgkA 278 64.08 c.2.1.2 128480 2i6uA 307 64.38 2b5wA 357 64.43 1zmoA 244 64.57 2hq1A 247 64.66 1tltA 319 65.12 c.2.1.3,d.81.1.5 107135,107136 1x1tA 260 65.19 c.2.1.2 121597 1x0vA 354 65.84 1hrdA 449 65.89 c.2.1.7,c.58.1.1 30219,33867 2ph5A 480 66.35 1u8xX 472 66.41 c.2.1.5,d.162.1.2 107741,107742 1wlyA 333 66.70 1x7gA 261 67.88 c.2.1.2 114929 1pzgA 331 68.19 c.2.1.5,d.162.1.1 95425,95426 1geeA 261 68.25 c.2.1.2 90509 1bgvA 449 68.34 c.2.1.7,c.58.1.1 30217,33865 2pnfA 248 68.48 1yb5A 351 68.51 b.35.1.2,c.2.1.1 116601,116602 2dm6A 333 69.22 b.35.1.2,c.2.1.1 131567,131568 1gcoA 261 69.34 c.2.1.2 29884 2iidA 498 69.70 c.3.1.2,d.16.1.5 137426,137427 2gagA 965 69.78 1lvlA 458 70.39 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2j3hA 345 70.59 2h7mA 269 71.71 c.2.1.2 136219 1y8qA 346 72.06 2o2yA 349 72.26 c.2.1.2 138894 2v6oA 596 73.59 2cfcA 250 74.70 2gz1A 366 74.97 c.2.1.3,d.81.1.1 135887,135888 1hyhA 309 75.53 c.2.1.5,d.162.1.1 30150,42117 1hxhA 253 75.92 c.2.1.2 76725 2axqA 467 76.43 2hmvA 144 77.74 c.2.1.9 136615 1gz6A 319 77.85 c.2.1.2 76410 1yovA 537 78.16 c.111.1.2 123785 1b4vA 504 79.16 c.3.1.2,d.16.1.1 30334,37865 1f8rA 498 80.43 c.3.1.2,d.16.1.5 30410,37974 1o94A 729 80.68 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1zud1 251 81.04 1kevA 351 81.39 b.35.1.2,c.2.1.1 24749,29765 1xtpA 254 81.98 c.66.1.42 116031 1e6wA 260 82.24 c.2.1.2 59326 1gteA 1025 83.96 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1h7wA 1025 84.26 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1xg5A 279 84.44 c.2.1.2 115277 1uh5A 329 84.57 c.2.1.2 107840 1gu7A 364 84.97 b.35.1.2,c.2.1.1 83321,83322 1o6zA 303 85.23 c.2.1.5,d.162.1.1 81107,81108 1bdb 277 85.54 1up6A 416 86.12 c.2.1.5,d.162.1.2 107976,107977 3ceaA 346 87.48 2glxA 332 88.78 1lsuA 147 89.74 c.2.1.9 74250