# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c2xA 281 0.000140 1b0aA 288 0.000307 c.2.1.7,c.58.1.2 30286,33934 1ygyA 529 0.000391 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2eklA 313 0.000438 1gdhA 320 0.000472 c.2.1.4,c.23.12.1 30095,31355 2gcgA 330 0.000514 2cukA 311 0.000518 1a4iA 301 0.000527 c.2.1.7,c.58.1.2 30278,33926 1wwkA 307 0.000610 2vojA 371 0.000617 2g76A 335 0.000634 2pi1A 334 0.000706 2nacA 393 0.000724 c.2.1.4,c.23.12.1 30088,31348 2dbqA 334 0.000796 1psdA 409 0.000873 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1mx3A 347 0.000941 c.2.1.4,c.23.12.1 79638,79639 1j4aA 333 0.001027 c.2.1.4,c.23.12.1 71502,71503 2j6iA 364 0.001353 2fssA 365 0.001365 1dxyA 333 0.001554 c.2.1.4,c.23.12.1 30094,31354 1qp8A 303 0.001568 c.2.1.4,c.23.12.1 30092,31352 2vhxA 377 0.001709 2d0iA 333 0.001799 1sc6A 404 0.002269 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1xdwA 331 0.002283 1dxy 333 0.002552 2o4cA 380 0.003362 1li4A 432 0.003768 c.2.1.4,c.23.12.3 84616,84617 2qrlA 394 0.003979 1edzA 320 0.004208 c.2.1.7,c.58.1.2 30287,33935 1v8bA 479 0.004310 c.2.1.4,c.23.12.3 113564,113565 1xwfA 431 0.004551 c.2.1.4,c.23.12.3 122392,122393 1d4fA 431 0.008318 c.2.1.4,c.23.12.3 30110,31370 1pjcA 361 0.01603 c.2.1.4,c.23.12.2 30101,31361 1l7dA 384 0.1996 c.2.1.4,c.23.12.2 77774,77775 1x7dA 350 0.2681 c.2.1.13 114927 1lehA 364 0.3524 c.2.1.7,c.58.1.1 30268,33916 1x13A 401 0.3854 1gpjA 404 0.4006 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2hk9A 275 0.5584 1p77A 272 0.7249 c.2.1.7,c.58.1.5 94214,94215 1vllA 334 0.8387 c.2.1.13 108834 1nytA 271 0.9297 c.2.1.7,c.58.1.5 86417,86418 2nloA 302 1.106 1vpdA 299 1.526 a.100.1.1,c.2.1.6 113951,113952 2eggA 297 1.581 2d5cA 263 1.716 1c1dA 355 1.785 c.2.1.7,c.58.1.1 30270,33918 1omoA 322 1.894 c.2.1.13 104017 1np3A 338 2.014 a.100.1.2,c.2.1.6 85946,85947 1yrlA 491 2.319 2h78A 302 2.799 1bg6 359 2.843 2f1kA 279 3.461 a.100.1.12,c.2.1.6 132772,132773 1nvtA 287 3.540 c.2.1.7,c.58.1.5 86270,86271 2cdcA 366 4.174 1npyA 271 4.301 c.2.1.7,c.58.1.5 85995,85996 1uufA 369 4.928 b.35.1.2,c.2.1.1 100006,100007 2g5cA 281 5.604 a.100.1.12,c.2.1.6 134646,134647 2izzA 322 5.649 1vi2A 300 5.704 c.2.1.7,c.58.1.5 100726,100727 1qmgA 524 5.715 a.100.1.2,c.2.1.6 18785,30182 3c24A 286 5.960 1kevA 351 6.171 b.35.1.2,c.2.1.1 24749,29765 1bg6A 359 6.255 a.100.1.5,c.2.1.6 18810,30214 2ahrA 259 6.301 a.100.1.10,c.2.1.6 126775,126776 2pgd 482 6.364 2ew2A 316 6.810 1ks9A 291 7.043 a.100.1.7,c.2.1.6 68857,68858 1e3jA 352 7.086 b.35.1.2,c.2.1.1 24765,29781 1vj0A 380 7.481 b.35.1.2,c.2.1.1 100786,100787 1yqdA 366 7.841 1evyA 366 8.260 a.100.1.6,c.2.1.6 18811,30215 1luaA 287 8.336 c.2.1.7,c.58.1.4 78216,78217 1f8fA 371 8.627 b.35.1.2,c.2.1.1 83246,83247 1pl8A 356 9.205 b.35.1.2,c.2.1.1 94878,94879 2p4qA 497 9.389 1y9aA 360 9.506 1jqbA 351 9.845 b.35.1.2,c.2.1.1 77151,77152 2o3jA 481 10.18 1p0fA 373 10.63 b.35.1.2,c.2.1.1 87642,87643 1yqgA 263 10.63 2h6eA 344 10.81 2cvzA 289 11.71 a.100.1.1,c.2.1.6 130890,130891 2b5wA 357 12.05 1jayA 212 12.72 c.2.1.6 66478 2eihA 343 12.85 2graA 277 12.89 2gptA 523 13.38 1n8kA 374 14.41 b.35.1.2,c.2.1.1 80298,80299 1dliA 402 14.50 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2o7sA 523 14.84 2pv7A 298 15.17 1zcjA 463 15.31 3grs 478 15.40 2a4kA 263 16.25 c.2.1.2 126156 1pgjA 478 16.70 a.100.1.1,c.2.1.6 18783,30195 2cf5A 357 16.98 1hyuA 521 17.11 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1i36A 264 17.53 a.100.1.8,c.2.1.6 71108,71109 1lluA 342 17.87 b.35.1.2,c.2.1.1 91064,91065 1u3wA 374 17.87 b.35.1.2,c.2.1.1 113013,113014 2ohxA 374 18.15 b.35.1.2,c.2.1.1 24669,29685 2pgdA 482 18.25 a.100.1.1,c.2.1.6 18778,30190 1o89A 345 18.49 b.35.1.2,c.2.1.1 92644,92645 1dljA 402 19.42 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1b3bA 415 19.63 c.2.1.7,c.58.1.1 30244,33892 1iz0A 302 21.18 b.35.1.2,c.2.1.1 83821,83822 1enp 312 21.19 2dvmA 439 21.40 1yb4A 295 21.49 1z82A 335 21.67 1qorA 327 21.75 b.35.1.2,c.2.1.1 24766,29782 1zbqA 327 22.65 c.2.1.2 124862 1h2bA 359 23.42 b.35.1.2,c.2.1.1 90543,90544 1jvbA 347 23.66 b.35.1.2,c.2.1.1 77181,77182 1xa0A 328 23.76 b.35.1.2,c.2.1.1 115021,115022 1kyqA 274 23.77 c.2.1.11,e.37.1.1 73281,73282 2hcyA 347 23.86 1o5iA 249 25.58 c.2.1.2 92499 2d8aA 348 26.89 1txgA 335 26.96 a.100.1.6,c.2.1.6 112775,112776 2gqwA 408 27.17 1fl2A 310 27.62 c.3.1.5,c.3.1.5 59869,59870 1trb 320 28.06 1zejA 293 30.06 2jahA 247 30.16 1gesA 450 30.69 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1hwxA 501 31.24 c.2.1.7,c.58.1.1 30250,33898 1mv8A 436 31.50 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1hrdA 449 31.55 c.2.1.7,c.58.1.1 30219,33867 1yxmA 303 32.00 c.2.1.2 124192 1uzmA 247 32.63 c.2.1.2 119811 2iidA 498 32.81 c.3.1.2,d.16.1.5 137426,137427 1b26A 416 32.84 c.2.1.7,c.58.1.1 30232,33880 1uluA 261 33.04 c.2.1.2 113292 1g0oA 283 33.14 c.2.1.2 60181 1ja9A 274 33.78 c.2.1.2 62817 1yb1A 272 34.01 c.2.1.2 116599 1othA 321 34.43 c.78.1.1,c.78.1.1 35260,35261 1o94A 729 35.37 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1gu7A 364 35.56 b.35.1.2,c.2.1.1 83321,83322 1f0yA 302 37.09 a.100.1.3,c.2.1.6 18793,30197 2fwmX 250 37.64 1ff9A 450 37.65 c.2.1.3,d.81.1.2 30039,39954 2ekpA 239 37.69 1s6yA 450 37.73 c.2.1.5,d.162.1.2 105314,105315 2ouiA 360 37.74 1d7yA 408 38.74 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 3ladA 476 38.81 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1nvmB 312 39.38 c.2.1.3,d.81.1.1 86251,86252 2h7mA 269 39.45 c.2.1.2 136219 1mo9A 523 41.95 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1d7oA 297 42.16 c.2.1.2 29907 2p91A 285 42.17 1gz6A 319 42.35 c.2.1.2 76410 1lsuA 147 42.42 c.2.1.9 74250 1tt7A 330 42.68 b.35.1.2,c.2.1.1 112623,112624 1pvvA 315 42.87 c.78.1.1,c.78.1.1 95190,95191 2c0cA 362 43.31 1x1eA 239 43.39 2hmvA 144 43.72 c.2.1.9 136615 2gagA 965 43.97 1bgvA 449 44.34 c.2.1.7,c.58.1.1 30217,33865 1b16A 254 44.46 c.2.1.2 29875 1wmaA 276 44.48 c.2.1.2 121042 1kolA 398 44.99 b.35.1.2,c.2.1.1 77474,77475 1ps9A 671 45.23 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2j3hA 345 45.66 2dtxA 264 45.93 1zmdA 474 46.55 2ag5A 246 46.63 c.2.1.2 126719 2nm0A 253 46.82 1ml4A 308 47.26 c.78.1.1,c.78.1.1 79255,79256 2tmdA 729 47.43 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1trbA 320 47.45 c.3.1.5,c.3.1.5 30529,30530 1h6vA 499 47.83 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1iy8A 267 48.04 c.2.1.2 83774 1zk7A 467 48.23 1bdbA 277 48.83 c.2.1.2 29874 2rcyA 262 49.10 2yquA 455 49.41 1dhr 241 49.63 1hdoA 206 49.76 c.2.1.2 60965 2o2yA 349 49.82 c.2.1.2 138894 2gdzA 267 51.36 c.2.1.2 135043 2hq1A 247 51.82 2dpoA 319 52.10 2cduA 452 52.18 1vl8A 267 52.26 c.2.1.2 108733 2ew8A 249 52.41 c.2.1.2 132447 2ph5A 480 52.56 2v3aA 384 52.76 2zbwA 335 52.84 1ooeA 236 53.50 c.2.1.2 87196 1xhcA 367 54.11 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1h5qA 265 54.21 c.2.1.2 60643 1q1rA 431 54.29 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2g1uA 155 54.84 1hxhA 253 55.01 c.2.1.2 76725 1xhlA 297 55.30 c.2.1.2 109591 1hdcA 253 55.42 c.2.1.2 29862 1fmcA 255 55.56 c.2.1.2 29856 1wlyA 333 55.83 1cydA 244 56.04 c.2.1.2 29825 1zemA 262 56.59 c.2.1.2 124984 1yb5A 351 57.54 b.35.1.2,c.2.1.1 116601,116602 1djqA 729 57.78 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1nffA 260 58.06 c.2.1.2 80457 2d1yA 256 58.16 c.2.1.2 131151 2i76A 276 58.38 2oosA 338 59.03 1w6uA 302 59.38 c.2.1.2 114288 1fcdA 401 60.15 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 2qytA 317 60.47 1lssA 140 60.72 c.2.1.9 74246 2q0lA 311 60.93 1k2wA 256 61.63 c.2.1.2 90927 1gegA 256 61.77 c.2.1.2 29888 2v6oA 596 62.05 1cjcA 460 62.31 c.3.1.1,c.4.1.1 30319,30604 1qsgA 265 62.49 c.2.1.2 29935 1xkqA 280 64.75 c.2.1.2 115417 1vqwA 457 65.54 c.3.1.5,c.3.1.5 114028,114029 1h7wA 1025 65.57 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1bdb 277 65.59 1fecA 490 65.64 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2fk8A 318 66.10 c.66.1.18 133648 1xseA 295 66.22 c.2.1.2 115925 2ae2A 260 66.40 c.2.1.2 29945 1yqzA 438 66.84 1y5mA 276 67.67 c.2.1.2 122645 3grsA 478 68.86 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1zk4A 251 69.12 c.2.1.2 125176 2r9zA 463 69.97 2axqA 467 70.13 2cfcA 250 70.69 1ydeA 270 72.85 c.2.1.2 122980 1pwxA 254 75.08 c.2.1.2 95262 1spxA 278 75.78 c.2.1.2 98958 1l1eA 287 76.03 c.66.1.18 73454 1b4vA 504 76.81 c.3.1.2,d.16.1.1 30334,37865 2bgkA 278 77.28 c.2.1.2 128480 1x1tA 260 78.40 c.2.1.2 121597 1x0vA 354 78.51 1u8xX 472 78.97 c.2.1.5,d.162.1.2 107741,107742 1zsyA 357 79.89 1q7bA 244 81.84 c.2.1.2 96026 2pnfA 248 83.26 1xu9A 286 83.96 c.2.1.2 116052 1qydA 313 87.20 c.2.1.2 96583 1e6wA 260 87.20 c.2.1.2 59326 2i6uA 307 87.60 1gtmA 419 88.19 c.2.1.7,c.58.1.1 30223,33871 1geeA 261 89.63 c.2.1.2 90509