# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c2xA 281 1.428 1b0aA 288 1.580 c.2.1.7,c.58.1.2 30286,33934 1ygyA 529 1.673 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2eklA 313 1.698 1a4iA 301 1.815 c.2.1.7,c.58.1.2 30278,33926 2vojA 371 1.852 2pi1A 334 1.885 2vhxA 377 1.965 2dbqA 334 2.043 1wwkA 307 2.064 2g76A 335 2.101 1qp8A 303 2.138 c.2.1.4,c.23.12.1 30092,31352 2cukA 311 2.258 1li4A 432 2.415 c.2.1.4,c.23.12.3 84616,84617 1gdhA 320 2.438 c.2.1.4,c.23.12.1 30095,31355 2j6iA 364 2.624 2gcgA 330 2.826 1d4fA 431 3.024 c.2.1.4,c.23.12.3 30110,31370 2fssA 365 3.030 1j4aA 333 3.103 c.2.1.4,c.23.12.1 71502,71503 2nacA 393 3.293 c.2.1.4,c.23.12.1 30088,31348 1mx3A 347 3.300 c.2.1.4,c.23.12.1 79638,79639 1dxy 333 3.334 1dxyA 333 3.534 c.2.1.4,c.23.12.1 30094,31354 1xdwA 331 3.781 1v8bA 479 3.838 c.2.1.4,c.23.12.3 113564,113565 1x13A 401 3.844 2d0iA 333 3.999 1l7dA 384 4.195 c.2.1.4,c.23.12.2 77774,77775 1xwfA 431 4.609 c.2.1.4,c.23.12.3 122392,122393 1pjcA 361 4.621 c.2.1.4,c.23.12.2 30101,31361 2o4cA 380 4.670 1psdA 409 8.074 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1sc6A 404 9.910 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1edzA 320 10.25 c.2.1.7,c.58.1.2 30287,33935 1lehA 364 11.04 c.2.1.7,c.58.1.1 30268,33916 1c1dA 355 11.07 c.2.1.7,c.58.1.1 30270,33918 2d5cA 263 14.00 1x7dA 350 15.66 c.2.1.13 114927 1vllA 334 16.31 c.2.1.13 108834 1omoA 322 16.55 c.2.1.13 104017 1gpjA 404 17.00 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1vpdA 299 17.62 a.100.1.1,c.2.1.6 113951,113952 1yrlA 491 20.99 2qrlA 394 21.18 1nytA 271 21.44 c.2.1.7,c.58.1.5 86417,86418 2hk9A 275 23.25 2eggA 297 23.53 2f1kA 279 23.93 a.100.1.12,c.2.1.6 132772,132773 1np3A 338 25.14 a.100.1.2,c.2.1.6 85946,85947 1vi2A 300 25.28 c.2.1.7,c.58.1.5 100726,100727 2nloA 302 28.05 1bg6 359 29.12 1bg6A 359 29.59 a.100.1.5,c.2.1.6 18810,30214 2h78A 302 30.20 1npyA 271 30.82 c.2.1.7,c.58.1.5 85995,85996 3c24A 286 32.20 1pvvA 315 36.84 c.78.1.1,c.78.1.1 95190,95191 2ahrA 259 39.76 a.100.1.10,c.2.1.6 126775,126776 1bgvA 449 39.95 c.2.1.7,c.58.1.1 30217,33865 1hrdA 449 41.72 c.2.1.7,c.58.1.1 30219,33867 1uufA 369 42.56 b.35.1.2,c.2.1.1 100006,100007 2dvmA 439 44.08 2p4qA 497 44.41 1qmgA 524 46.35 a.100.1.2,c.2.1.6 18785,30182 1p77A 272 46.99 c.2.1.7,c.58.1.5 94214,94215 1i36A 264 47.08 a.100.1.8,c.2.1.6 71108,71109 1iz0A 302 47.56 b.35.1.2,c.2.1.1 83821,83822 1b3bA 415 48.59 c.2.1.7,c.58.1.1 30244,33892 2h6eA 344 49.46 1b26A 416 50.66 c.2.1.7,c.58.1.1 30232,33880 1o89A 345 51.87 b.35.1.2,c.2.1.1 92644,92645 1vj0A 380 53.48 b.35.1.2,c.2.1.1 100786,100787 2g5cA 281 54.36 a.100.1.12,c.2.1.6 134646,134647 2cf5A 357 54.39 1qorA 327 54.78 b.35.1.2,c.2.1.1 24766,29782 1yqgA 263 54.90 1yb4A 295 54.95 1vl6A 388 56.20 c.2.1.7,c.58.1.3 108724,108725 1f0yA 302 56.39 a.100.1.3,c.2.1.6 18793,30197 1ml4A 308 57.26 c.78.1.1,c.78.1.1 79255,79256 1gtmA 419 58.19 c.2.1.7,c.58.1.1 30223,33871 1luaA 287 58.58 c.2.1.7,c.58.1.4 78216,78217 1lluA 342 59.80 b.35.1.2,c.2.1.1 91064,91065 2c0cA 362 59.99 2ef0A 301 60.30 2cvzA 289 61.05 a.100.1.1,c.2.1.6 130890,130891 2bmaA 470 61.23 1tt7A 330 61.89 b.35.1.2,c.2.1.1 112623,112624 1yqdA 366 64.79 2eihA 343 66.26 2a4kA 263 70.87 c.2.1.2 126156 2dpoA 319 71.44 2dm6A 333 72.17 b.35.1.2,c.2.1.1 131567,131568 1hwxA 501 73.32 c.2.1.7,c.58.1.1 30250,33898 2glxA 332 73.34 1kolA 398 74.16 b.35.1.2,c.2.1.1 77474,77475 2d8aA 348 75.14 1xa0A 328 75.97 b.35.1.2,c.2.1.1 115021,115022 1yb5A 351 76.82 b.35.1.2,c.2.1.1 116601,116602 1zsyA 357 76.95 1e3jA 352 77.36 b.35.1.2,c.2.1.1 24765,29781 1z82A 335 78.25 1gu7A 364 78.80 b.35.1.2,c.2.1.1 83321,83322 2i6uA 307 79.84 1f8fA 371 79.95 b.35.1.2,c.2.1.1 83246,83247 1zcjA 463 81.97 1jvbA 347 83.65 b.35.1.2,c.2.1.1 77181,77182 2p91A 285 83.93 2ew2A 316 84.11 2izzA 322 84.11