Best Alignments for T0398

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1pjcA/T0398-1pjcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pjcA/T0398-1pjcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3372e-283.09e-101 1sayA c.2.1.4
c.23.12.2
2dbqA/T0398-2dbqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2dbqA/T0398-2dbqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.0216e-282.99e-112
2vhxA/T0398-2vhxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2vhxA/T0398-2vhxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9314e-279.04e-100
2vojA/T0398-2vojA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2vojA/T0398-2vojA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2323e-272.37e-97
1b3rA/T0398-1b3rA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b3rA/T0398-1b3rA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4853e-271.18e-105 1b3rA c.2.1.4
c.23.12.3
1wwkA/T0398-1wwkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wwkA/T0398-1wwkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8630e-273.22e-111
1x13A/T0398-1x13A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x13A/T0398-1x13A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1302e-266.13e-110
2gcgA/T0398-2gcgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gcgA/T0398-2gcgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6660e-246.90e-100
2cukA/T0398-2cukA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cukA/T0398-2cukA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6531e-241.17e-95
1ygyA/T0398-1ygyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ygyA/T0398-1ygyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.0763e-241.30e-99 c.2.1.4
c.23.12.1
d.58.18.1
d.81.2.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001