Best Alignments for T0398

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1b0aA/T0398-1b0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b0aA/T0398-1b0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0822e-278.73e-95 1a4iA c.2.1.7
c.58.1.2
1pjcA/T0398-1pjcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pjcA/T0398-1pjcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2955e-263.09e-101 1sayA c.2.1.4
c.23.12.2
2vhxA/T0398-2vhxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2vhxA/T0398-2vhxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4430e-269.04e-100
2dbqA/T0398-2dbqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2dbqA/T0398-2dbqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4498e-263.25e-100
1x13A/T0398-1x13A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x13A/T0398-1x13A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8788e-266.13e-110
2vojA/T0398-2vojA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2vojA/T0398-2vojA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.4307e-262.37e-97
1wwkA/T0398-1wwkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wwkA/T0398-1wwkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3201e-251.65e-98
2c2xA/T0398-2c2xA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c2xA/T0398-2c2xA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3242e-254.61e-84
2gcgA/T0398-2gcgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gcgA/T0398-2gcgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3513e-237.20e-86
2cukA/T0398-2cukA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cukA/T0398-2cukA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7456e-225.10e-88

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001