PFRMAT SS
TARGET T0398
AUTHOR SAM-T02-server 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0398.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0398.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0398.t2k.str.rdb  (weight 1.53983)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0398.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0398
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0398.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 789
METHOD
METHOD ============================================
METHOD Comments from T0398.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0398
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0398.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 789
METHOD
METHOD ============================================
METHOD Comments from T0398.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0398
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0398.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 789
METHOD
METHOD ============================================
MODEL 1
M C 0.88
L C 0.81
T C 0.64
G E 0.51
K E 0.78
H E 0.89
V E 0.88
V E 0.81
I C 0.52
I H 0.57
G H 0.79
G H 0.93
D H 0.97
A H 0.97
R H 0.97
Q H 0.96
L H 0.95
E H 0.87
I H 0.64
I C 0.75
R C 0.81
K C 0.56
L E 0.68
S E 0.85
T E 0.85
F E 0.64
D C 0.62
A C 0.70
K C 0.46
I E 0.48
S E 0.54
L E 0.59
V E 0.54
G E 0.48
F C 0.61
D C 0.79
Q H 0.52
L H 0.75
D H 0.84
D H 0.80
G H 0.77
F H 0.73
I H 0.56
G C 0.73
V C 0.61
T E 0.47
K E 0.45
M C 0.58
R C 0.67
I C 0.64
D H 0.66
E H 0.77
V H 0.80
D H 0.79
W H 0.76
N H 0.61
T C 0.53
V C 0.67
D C 0.66
A E 0.67
I E 0.83
L E 0.87
L E 0.79
P C 0.50
I C 0.71
S C 0.82
G C 0.86
T C 0.82
N C 0.70
E C 0.62
A C 0.54
G C 0.50
K H 0.42
V H 0.46
D H 0.41
T H 0.40
I H 0.44
F C 0.46
S C 0.47
N C 0.50
E H 0.42
S H 0.49
I H 0.56
V H 0.62
L H 0.63
T H 0.68
E H 0.80
E H 0.75
M H 0.69
I H 0.55
E C 0.61
K C 0.69
T C 0.68
P C 0.63
N C 0.56
H C 0.46
C E 0.53
V E 0.65
V E 0.71
Y E 0.75
S E 0.69
G E 0.56
I E 0.44
S C 0.53
N C 0.50
T H 0.50
Y H 0.59
L H 0.62
N H 0.64
Q H 0.62
C H 0.64
M H 0.71
K H 0.77
K H 0.78
T H 0.83
N H 0.82
R H 0.80
T H 0.75
L H 0.78
V H 0.81
K H 0.80
L H 0.79
M H 0.69
E H 0.67
R H 0.75
D H 0.76
D H 0.80
I H 0.87
A H 0.88
I H 0.90
Y H 0.89
N H 0.87
S H 0.84
I H 0.85
P H 0.85
T H 0.86
A H 0.87
E H 0.87
G H 0.85
T H 0.83
I H 0.78
M H 0.73
M H 0.68
A H 0.54
I C 0.51
Q C 0.66
H C 0.70
T C 0.72
D C 0.67
F E 0.56
T E 0.70
I E 0.56
H C 0.81
G C 0.92
A C 0.70
N E 0.84
V E 0.97
A E 0.98
V E 0.98
L E 0.91
G E 0.52
L C 0.83
G C 0.81
R H 0.94
V H 0.96
G H 0.97
M H 0.98
S H 0.98
V H 0.98
A H 0.98
R H 0.97
K H 0.97
F H 0.96
A H 0.95
A H 0.86
L C 0.66
G C 0.98
A C 0.93
K E 0.75
V E 0.96
K E 0.98
V E 0.97
G E 0.91
A E 0.50
R C 0.93
E C 0.94
S H 0.66
D H 0.75
L H 0.83
L H 0.88
A H 0.88
R H 0.91
I H 0.91
A H 0.92
E H 0.87
M H 0.60
G C 0.85
M C 0.87
E C 0.72
P C 0.50
F C 0.48
H C 0.49
I C 0.46
S H 0.48
K H 0.52
A H 0.47
A H 0.48
Q C 0.45
E C 0.39
L E 0.51
R E 0.65
D E 0.72
V E 0.75
D E 0.72
V E 0.60
C C 0.55
I C 0.72
N C 0.85
T C 0.87
I C 0.88
P C 0.87
A C 0.71
L C 0.64
V C 0.55
V C 0.59
T C 0.80
A H 0.95
N H 0.96
V H 0.96
L H 0.95
A H 0.85
E H 0.62
M C 0.71
P C 0.90
S C 0.91
H C 0.91
T E 0.66
F E 0.97
V E 0.98
I E 0.97
D E 0.92
L E 0.62
A C 0.66
S C 0.81
K C 0.88
P C 0.85
G C 0.77
G C 0.66
T C 0.67
D H 0.52
F H 0.91
R H 0.94
Y H 0.95
A H 0.94
E H 0.91
K H 0.84
R H 0.53
G C 0.90
I C 0.85
K C 0.58
A E 0.68
L E 0.76
L E 0.69
V C 0.52
P C 0.75
G C 0.85
L C 0.78
P C 0.77
G C 0.57
I C 0.51
V C 0.60
A C 0.75
P C 0.84
K C 0.76
T C 0.66
A H 0.63
G H 0.79
R H 0.90
I H 0.92
L H 0.92
A H 0.87
D H 0.77
V H 0.76
L H 0.69
V H 0.77
K H 0.80
L H 0.81
L H 0.67
A C 0.47
E C 0.80
P C 0.93
S C 0.98
END