TARGET  T0397
Requested by servers@predictioncenter.org

Mon May 12 09:09:27 PDT 2008
Make started Mon May 12 09:23:41 PDT 2008
Running on moai11.kilokluster.ucsc.edu


CASP rejected model2, so I replaced try1-init with try1-opt1.

YOUR SUBMISSION CANNOT BE ACCEPTED 
THE FORMAT OF YOUR PREDICTION IS NOT CORRECT

Please check the format at:
http://predictioncenter.org/casp8/index.cgi?page=format

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OUTPUT FROM THE VERIFICATION SERVER BELOW

# Reading prediction format TS

PFRMAT TS
TARGET T0397
AUTHOR SAM-T08-server
REMARK   6 
REMARK   6 T0397 model 2 Mon May 12 14:20:10 2008

# Reading MODEL  2
PARENT N/A

# Reading prediction format TS             (DONE)

# Checking the TS prediction MODEL  2
# Checking the TS prediction MODEL  2      (DONE)

# MODEL index: 2 

# Target name: T0397   
# Total number of residues in target:             150 
# Total number of residues in model:              146 
# Total number of atoms in model:                1180 
# Number of atoms with 1.0 occupancy:            1180 
# Number of fragments in model:                     1 
# Number of METHOD records:                         7 

# No errors in format. Checking prediction geometry ...

# Warning! CA-CA clash (3.32A) between residues MET1 and LYS2
# Warning! CA-CA clash (3.43A) between residues GLY10 and LYS22
# Warning! Too big distance ( 6.24A) between residues GLU11 and LEU12
# Warning! CA-CA clash (2.75A) between residues GLU11 and GLU21
# Warning! CA-CA clash (0.04A) between residues ASP16 and ASN39
# Warning! Severe CA-CA clash (0.04A) between residues ASP16 and ASN39
# Warning! CA-CA clash (1.06A) between residues ARG17 and GLY40
# Warning! Severe CA-CA clash (1.06A) between residues ARG17 and GLY40
# Warning! CA-CA clash (3.03A) between residues VAL18 and GLY40
# Warning! CA-CA clash (2.75A) between residues VAL18 and LYS41
# Warning! CA-CA clash (2.54A) between residues VAL18 and LEU42
# Warning! CA-CA clash (3.18A) between residues VAL18 and LEU43
# Warning! CA-CA clash (2.74A) between residues VAL18 and GLN45
# Warning! CA-CA clash (2.66A) between residues VAL18 and VAL46
# Warning! CA-CA clash (2.91A) between residues VAL18 and ILE47
# Warning! CA-CA clash (1.32A) between residues ALA19 and LEU43
# Warning! Severe CA-CA clash (1.32A) between residues ALA19 and LEU43
# Warning! CA-CA clash (2.80A) between residues ALA19 and TYR44
# Warning! CA-CA clash (1.91A) between residues ALA19 and ILE47
# Warning! CA-CA clash (2.12A) between residues ALA19 and TYR48
# Warning! CA-CA clash (2.99A) between residues ILE20 and LEU43
# Warning! CA-CA clash (3.06A) between residues ILE20 and ILE47
# Warning! CA-CA clash (3.22A) between residues ILE20 and ASP50
# Warning! Too big distance (23.22A) between residues GLY38 and ASN39
# Warning! CA-CA clash (0.02A) between residues LYS41 and GLN45
# Warning! Severe CA-CA clash (0.02A) between residues LYS41 and GLN45
# Warning! CA-CA clash (0.14A) between residues LEU42 and VAL46
# Warning! Severe CA-CA clash (0.14A) between residues LEU42 and VAL46
# Warning! CA-CA clash (0.67A) between residues LEU43 and ILE47
# Warning! Severe CA-CA clash (0.67A) between residues LEU43 and ILE47
# Warning! CA-CA clash (3.23A) between residues LEU43 and TYR48
# Warning! Too big distance ( 5.12A) between residues TYR44 and GLN45
# Warning! CA-CA clash (0.73A) between residues TYR44 and TYR48
# Warning! Severe CA-CA clash (0.73A) between residues TYR44 and TYR48
# Warning! CA-CA clash (2.36A) between residues ASP70 and LYS71
# Warning! CA-CA clash (3.02A) between residues LEU74 and LYS82
# Warning! CA-CA clash (2.68A) between residues LEU74 and LEU83
# Warning! CA-CA clash (2.03A) between residues THR75 and VAL86
# Warning! CA-CA clash (2.82A) between residues THR75 and PRO87
# Warning! CA-CA clash (1.42A) between residues TYR76 and ALA79
# Warning! Severe CA-CA clash (1.42A) between residues TYR76 and ALA79
# Warning! CA-CA clash (1.04A) between residues TYR76 and PRO87
# Warning! Severe CA-CA clash (1.04A) between residues TYR76 and PRO87
# Warning! CA-CA clash (1.79A) between residues ALA79 and PRO87
# Warning! Severe CA-CA clash (1.79A) between residues ALA79 and PRO87
# Warning! CA-CA clash (3.46A) between residues ALA79 and ALA88
# Warning! CA-CA clash (2.58A) between residues VAL86 and ALA88
# Warning! Too big distance ( 5.61A) between residues LYS115 and LYS116
# Warning! CA-CA clash (0.02A) between residues LEU119 and ARG120
# Warning! Severe CA-CA clash (0.02A) between residues LEU119 and ARG120
# Warning! Too big distance (10.62A) between residues ALA141 and ASN142

# ERROR! Too many steric clashes in the prediction. It can not be accepted. You might consider correction and resubmission of the prediction before the target deadline.

# Checking prediction geometry             (DONE)


# Number of Warnings:	0
# Number of Errors:	1