Best Alignments for T0397

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1htp/T0397-1htp-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1htp/T0397-1htp-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1078e-017.29e-08 1htp
1zkoA/T0397-1zkoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zkoA/T0397-1zkoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.7928e-011.17e-05
1brwA/T0397-1brwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1brwA/T0397-1brwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9418e+008.36e-07 1brwA a.46.2.1
c.27.1.1
d.41.3.1
2evbA/T0397-2evbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2evbA/T0397-2evbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4386e+003.87e-06
2gcuA/T0397-2gcuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gcuA/T0397-2gcuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.1547e+002.49e-08
1vdzA/T0397-1vdzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vdzA/T0397-1vdzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.6491e+006.53e-06
1zi0A/T0397-1zi0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zi0A/T0397-1zi0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.5838e+007.50e-13
1z6hA/T0397-1z6hA-t2k-local-adpstyle1.a2m 1z6hA/T0397-1z6hA-t2k-local-adpstyle1.al 9.8237e+001.19e+00
2ejmA/T0397-2ejmA-t2k-local-adpstyle1.a2m 2ejmA/T0397-2ejmA-t2k-local-adpstyle1.al 1.2288e+011.35e+00

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001