Best Alignments for T0397

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1htp/T0397-1htp-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1htp/T0397-1htp-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1592e+001.36e-05 1htp
1zkoA/T0397-1zkoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zkoA/T0397-1zkoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1857e+002.94e-03
1brwA/T0397-1brwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1brwA/T0397-1brwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5873e+008.36e-07 1brwA a.46.2.1
c.27.1.1
d.41.3.1
2evbA/T0397-2evbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2evbA/T0397-2evbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4466e+001.47e-05
1vdzA/T0397-1vdzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vdzA/T0397-1vdzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.2789e+002.22e-05
2ej8A/T0397-2ej8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ej8A/T0397-2ej8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0875e+016.24e-06
2p18A/T0397-2p18A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2p18A/T0397-2p18A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3778e+014.82e-06
3bjkA/T0397-3bjkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3bjkA/T0397-3bjkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5294e+015.11e-06

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001