# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1brwA 433 4.42e-02 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1htp 131 1.02e-01 1htp 1zkoA 136 1.48e-01 1hpcA 131 2.18e-01 1htp b.84.1.1 28221 2gaiA 633 3.25e-01 1y8oB 128 3.33e-01 b.84.1.1 122759 1hqcA 324 3.47e-01 1hqcA a.4.5.11,c.37.1.20 16127,32424 1gjxA 81 4.54e-01 b.84.1.1 65222 1k8mA 93 5.75e-01 b.84.1.1 68314 2evbA 74 7.18e-01 2gcuA 245 9.62e-01 1yx0A 159 1.37e+00 d.108.1.1 124168 3csvA 333 2.09e+00 1hdhA 536 2.25e+00 c.76.1.2 65805 2qm1A 326 2.25e+00 1in4A 334 2.33e+00 1hqcA a.4.5.11,c.37.1.20 62597,62598 1j8yF 297 2.53e+00 1ng1 a.24.13.1,c.37.1.10 62747,62748 1in6A 334 2.71e+00 1hqcA a.4.5.11,c.37.1.20 62601,62602 1j8mF 297 2.83e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1j99A 293 2.83e+00 c.37.1.5 71618 1umwA 237 3.33e+00 d.223.1.2,d.223.1.2 99631,99632 1rpxA 230 3.36e+00 1rpxA c.1.2.2 28536 1qjoA 80 4.37e+00 1iyu b.84.1.1 28229 2p18A 311 4.89e+00 1gpr 162 5.03e+00 1gpr 1gprA 162 5.03e+00 b.84.3.1 28267 2eenA 183 5.22e+00 1an7A 136 5.25e+00 1seiA d.140.1.1 41465 2vgnA 386 5.55e+00 2cghA 268 5.73e+00 1ghj 79 5.87e+00 1ghj 1x1oA 286 6.30e+00 1qltA 560 6.53e+00 1qltA d.58.32.1,d.145.1.1 39457,41720 1e8gA 560 7.01e+00 1qltA d.58.32.1,d.145.1.1 39455,41718 1w1kA 560 8.07e+00 d.58.32.1,d.145.1.1 109059,109060 2ccmA 191 9.08e+00 1tdtA 259 9.36e+00 3tdt b.81.1.2 28055 1bxsA 501 1.06e+01 1bpwA c.82.1.1 35357 2dsjA 423 1.09e+01 2azqA 311 1.15e+01 1vaoA 560 1.22e+01 1qltA d.58.32.1,d.145.1.1 39461,41724 1qhqA 140 1.23e+01 1qhqA b.6.1.1 63326 1vdzA 588 1.25e+01 2obaA 138 1.29e+01 3tdt 274 1.30e+01 3tdt 3tdtA 274 1.30e+01 b.81.1.2 28053 1ej6A 1289 1.34e+01 i.7.1.1 45967 2in0A 139 1.41e+01 2hsiA 282 1.43e+01 1uu1A 335 1.51e+01 c.67.1.1 99993 1wriA 93 1.58e+01 d.15.4.1 114838 2q3mA 326 1.61e+01 c.37.1.5 139795 1q6zA 528 1.82e+01 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2bl0C 142 1.82e+01 3cnwA 148 1.88e+01 1y7rA 133 1.94e+01 d.108.1.1 122716 2od5A 116 2.07e+01 1n3lA 372 2.12e+01 c.26.1.1 79966 1zwxA 301 2.24e+01 d.151.1.3 125752 1bfd 528 2.24e+01 1bfd 1qpoA 284 2.25e+01 1qpoA c.1.17.1,d.41.2.1 29561,38597 1tazA 365 2.43e+01 a.211.1.2 106734 2vesA 299 2.45e+01 2hgkA 117 2.46e+01 1konA 249 2.47e+01 e.39.1.1 72823 1wyuA 438 2.49e+01 c.67.1.7 121452 1mb3A 124 2.51e+01 c.23.1.1 78907 1awiA 138 2.56e+01 1pne d.110.1.1 40871 1zq1C 633 2.59e+01 a.182.1.2,d.74.4.1,d.128.1.5 125493,125494,125495 2d4zA 250 2.81e+01 d.37.1.1,d.37.1.1 131260,131261 1whmA 92 2.91e+01 b.34.10.1 114647 2nugA 221 2.92e+01 1i52A 236 3.02e+01 1i52A c.68.1.13 61767 2hy1A 280 3.11e+01 2iwbA 246 3.15e+01 1yavA 159 3.17e+01 d.37.1.1,d.37.1.1 116595,116596 2pavP 139 3.20e+01 1vhmA 195 3.31e+01 d.110.2.1 100691 2czlA 272 3.36e+01 c.94.1.1 131055 1tbfA 347 3.43e+01 a.211.1.2 106743 1pszA 303 3.50e+01 1toaA c.92.2.2 35600 2qggA 182 3.51e+01 1lmeA 176 3.57e+01 d.167.1.1 84629 2e3hA 90 3.70e+01 2aujD 309 3.77e+01 2nu8B 388 3.82e+01 1tr7A 164 3.82e+01 b.2.3.2 119328 1seiA 130 4.09e+01 1seiA d.140.1.1 41463 2vnvA 129 4.16e+01 1vecA 206 4.21e+01 c.37.1.19 100575 1aquA 297 4.29e+01 1aquA c.37.1.5 31942 1qwyA 291 4.37e+01 b.84.3.2 96509 2bv2A 83 4.41e+01 1w23A 360 4.48e+01 c.67.1.4 114088 3c8cA 240 4.54e+01 1h8gA 95 4.58e+01 b.109.1.1 65735 2iv2X 715 4.62e+01 b.52.2.2,c.81.1.1 137714,137715 1z54A 132 4.68e+01 d.38.1.1 124450 3c9hA 355 4.74e+01 1v4sA 455 4.79e+01 c.55.1.3,c.55.1.3 100309,100310 2qpqA 301 4.80e+01 2r77A 205 4.89e+01 1bdoA 80 4.98e+01 b.84.1.1 28214 1yqeA 282 5.06e+01 c.56.7.1 123879 1uwfA 158 5.14e+01 b.2.3.2 119758 1mzyA 333 5.22e+01 b.6.1.3,b.6.1.3 103848,103849 2eveA 157 5.23e+01 b.122.1.8 132427 2zc3A 168 5.28e+01 1udxA 416 5.32e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1gvmA 136 5.35e+01 b.109.1.1 70612 1pne 140 5.38e+01 1pne 1bdo 80 5.52e+01 1bdo 1hcxA 127 5.59e+01 b.109.1.1 65800 1wzuA 300 5.68e+01 c.145.1.1 121528 1pneA 139 5.84e+01 d.110.1.1 40866 2anrA 178 5.87e+01 1mk4A 157 5.87e+01 d.108.1.1 84979 2vroA 532 5.91e+01 1k8kC 372 5.96e+01 b.69.4.1 68308 1dgwA 178 5.98e+01 1dgwA b.82.1.2 28090 2v79A 135 6.02e+01 1cauA 181 6.08e+01 1dgwA b.82.1.2 28102 1ybyA 215 6.09e+01 1q5hA 147 6.14e+01 b.85.4.1 95893 2nxfA 322 6.16e+01 1yrbA 262 6.20e+01 c.37.1.10 123915 1otjA 283 6.23e+01 b.82.2.5 93517 3cbwA 353 6.44e+01 1wy6A 172 6.53e+01 a.118.20.1 121432 1g5aA 628 6.54e+01 b.71.1.1,c.1.8.1 65152,65153 2a6hC 1119 6.57e+01 e.29.1.1 126264 1kiuB 279 6.78e+01 b.2.3.2,b.2.3.2 72525,72526 1fxiA 96 6.80e+01 1awd d.15.4.1 37664 2ivwA 113 6.98e+01 2cc0A 195 7.03e+01 c.6.2.3 130209 1r9hA 135 7.11e+01 d.26.1.1 97260 2q0oA 236 7.11e+01 1vjqA 79 7.15e+01 k.43.1.1 100830 1m6iA 493 7.16e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2dk1A 50 7.19e+01 b.72.1.1 131550 1ecxA 384 7.24e+01 1ecxA c.67.1.3 34431 1g2rA 100 7.31e+01 1g2rA d.192.1.1 60231 2qnkA 286 7.33e+01 2dbhA 102 7.33e+01 1u5uA 374 7.49e+01 e.5.1.2 113052 1fm4A 159 7.63e+01 1bv1 d.129.3.1 76186 1s1fA 406 7.65e+01 a.104.1.1 112008 2scuB 388 7.84e+01 2scuB c.23.4.1,d.142.1.4 31141,41562 2yvuA 186 7.96e+01