# List of top-scoring protein chains for T0397.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2czlA 272 6.13e-01 c.94.1.1 131055 1labA 80 6.92e-01 b.84.1.1 28226 1brwA 433 7.95e-01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1rpxA 230 1.59e+00 1rpxA c.1.2.2 28536 1pszA 303 3.27e+00 1toaA c.92.2.2 35600 2dneA 108 3.51e+00 2gaiA 633 3.61e+00 1z6hA 72 4.11e+00 1tqjA 230 5.41e+00 c.1.2.2 107228 1hpcA 131 6.43e+00 1htp b.84.1.1 28221 2ejmA 99 6.94e+00 1s1iB 253 7.38e+00 i.1.1.1 105176 1wzuA 300 7.42e+00 c.145.1.1 121528 1mk4A 157 7.61e+00 d.108.1.1 84979 1zkoA 136 8.22e+00 1z9bA 135 9.50e+00 1efhA 292 9.73e+00 1aquA c.37.1.5 31948 1ov4A 293 1.21e+01 c.37.1.5 93581 1seiA 130 1.30e+01 1seiA d.140.1.1 41463 1e0cA 271 1.35e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 2bazA 142 1.48e+01 1orvA 728 1.48e+01 b.70.3.1,c.69.1.24 87354,87355 2dncA 98 1.50e+01 1bhuA 102 1.52e+01 b.11.1.3 23631 1kkhA 317 1.62e+01 d.14.1.5,d.58.26.3 72645,72646 1lmeA 176 1.64e+01 d.167.1.1 84629 2d4eA 515 1.65e+01 1j99A 293 1.69e+01 c.37.1.5 71618 2edgA 130 1.73e+01 1gprA 162 1.74e+01 b.84.3.1 28267 2dyiA 162 1.81e+01 3bjoA 103 1.82e+01 1visA 324 1.84e+01 d.14.1.5,d.58.26.3 100769,100770 1fycA 106 1.86e+01 b.84.1.1 28230 1y8oB 128 1.90e+01 b.84.1.1 122759 1yx0A 159 2.02e+01 d.108.1.1 124168 2hgzA 306 2.18e+01 1uymA 220 2.35e+01 d.122.1.1 108148 3crkC 87 2.41e+01 1m9mA 415 2.41e+01 d.174.1.1 74595 1gjxA 81 2.45e+01 b.84.1.1 65222 3nosA 427 2.46e+01 1nseA d.174.1.1 42520 2qm1A 326 2.63e+01 1mb3A 124 2.77e+01 c.23.1.1 78907 1mzzA 334 3.23e+01 b.6.1.3,b.6.1.3 103850,103851 1mzyA 333 3.31e+01 b.6.1.3,b.6.1.3 103848,103849 2gcuA 245 3.35e+01 2hyoA 280 3.49e+01 1zy8K 229 3.53e+01 1n70A 334 3.64e+01 b.6.1.3,b.6.1.3 103856,103857 2a4cA 99 3.82e+01 2qe7A 502 3.92e+01 2g6oA 416 4.09e+01 d.174.1.1 134715 1zv2A 328 4.10e+01 b.6.1.3,b.6.1.3 125689,125690 1p6mA 417 4.10e+01 d.174.1.1 94181 2dwtA 329 4.11e+01 b.6.1.3,b.6.1.3 131856,131857 1q2oA 416 4.15e+01 d.174.1.1 95632 1zztA 416 4.19e+01 1d0cA 444 4.24e+01 d.174.1.1 64769 2gya2 222 4.26e+01 2rdo9 233 4.34e+01 1za7A 165 4.36e+01 1ayeA 401 4.39e+01 c.56.5.1,d.58.3.1 33824,39065 2g8sA 353 4.44e+01 2hy1A 280 4.50e+01 1u7xA 312 4.55e+01 1ixrC 312 4.77e+01 a.4.5.11,c.37.1.20 76930,76931 1ixsB 318 4.79e+01 a.4.5.11,c.37.1.20 76933,76934 1hqcA 324 4.80e+01 1hqcA a.4.5.11,c.37.1.20 16127,32424 1v4tA 451 4.91e+01 c.55.1.3,c.55.1.3 100311,100312 1v4sA 455 4.93e+01 c.55.1.3,c.55.1.3 100309,100310 1konA 249 5.09e+01 e.39.1.1 72823 2a4eA 215 5.11e+01 2okkA 497 5.16e+01 1cwpA 190 5.22e+01 1cwpA b.121.4.5 23305 1k8mA 93 5.27e+01 b.84.1.1 68314 1uebA 184 5.33e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2hq7A 146 5.45e+01 b.45.1.1 136657 2hypA 280 5.65e+01 1rvkA 382 5.72e+01 c.1.11.2,d.54.1.1 97928,97929 1fxiA 96 5.83e+01 1awd d.15.4.1 37664 1ykaA 115 5.88e+01 2pxhA 314 5.97e+01 1gs7A 336 6.00e+01 b.6.1.3,b.6.1.3 65531,65532 1szzA 177 6.23e+01 2eenA 183 6.25e+01 1y6hA 177 6.35e+01 d.167.1.1 116505 3cdkA 241 6.40e+01 2dsjA 423 6.46e+01 1j1uA 306 6.54e+01 c.26.1.1 83980 2iagA 482 7.01e+01 2evbA 74 7.06e+01 3b6hA 498 7.10e+01 1va0A 239 7.21e+01 c.90.1.1 119899 1eg5A 384 7.27e+01 1ecxA c.67.1.3 34429 2bplA 608 7.90e+01 c.80.1.1,d.153.1.1 128938,128939 2j6hA 608 7.94e+01 c.80.1.1,d.153.1.1 138084,138085