# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1brwA 433 3.82e-01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1htp 131 3.90e-01 1htp 1zkoA 136 4.86e-01 1hpcA 131 7.92e-01 1htp b.84.1.1 28221 1y8oB 128 9.15e-01 b.84.1.1 122759 1k8mA 93 9.25e-01 b.84.1.1 68314 2gaiA 633 1.58e+00 2gcuA 245 1.84e+00 2qm1A 326 2.09e+00 2evbA 74 2.98e+00 2czlA 272 3.81e+00 c.94.1.1 131055 2nugA 221 4.06e+00 1yx0A 159 4.84e+00 d.108.1.1 124168 1j99A 293 6.31e+00 c.37.1.5 71618 1in4A 334 7.52e+00 1hqcA a.4.5.11,c.37.1.20 62597,62598 1kkhA 317 7.56e+00 d.14.1.5,d.58.26.3 72645,72646 1gpr 162 8.00e+00 1gpr 1gprA 162 8.00e+00 b.84.3.1 28267 1in6A 334 8.39e+00 1hqcA a.4.5.11,c.37.1.20 62601,62602 1ghj 79 8.61e+00 1ghj 1e8gA 560 8.72e+00 1qltA d.58.32.1,d.145.1.1 39455,41718 2vgnA 386 9.33e+00 2eenA 183 9.39e+00 1w1kA 560 9.73e+00 d.58.32.1,d.145.1.1 109059,109060 1uu1A 335 1.06e+01 c.67.1.1 99993 2fa8A 105 1.12e+01 c.47.1.23 133185 1hdhA 536 1.17e+01 c.76.1.2 65805 2cghA 268 1.22e+01 1x1oA 286 1.24e+01 1xdnA 277 1.59e+01 d.142.2.4 115168 2g8sA 353 1.63e+01 1u7zA 226 1.67e+01 c.72.3.1 113107 1vdzA 588 1.70e+01 1wriA 93 1.70e+01 d.15.4.1 114838 1q6zA 528 1.98e+01 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1i52A 236 2.04e+01 1i52A c.68.1.13 61767 1cb8A 678 2.04e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1wzuA 300 2.11e+01 c.145.1.1 121528 1bfd 528 2.25e+01 1bfd 2dsjA 423 2.44e+01 2aujD 309 2.69e+01 1rpxA 230 2.69e+01 1rpxA c.1.2.2 28536 1mk4A 157 2.73e+01 d.108.1.1 84979 2azqA 311 2.80e+01 2uzxB 727 2.88e+01 8dfrA 189 2.93e+01 c.71.1.1 34895 1sr8A 298 2.98e+01 e.54.1.1 105959 1nr0A 611 3.21e+01 b.69.4.1,b.69.4.1 86078,86079 1lmeA 176 3.27e+01 d.167.1.1 84629 1seiA 130 3.27e+01 1seiA d.140.1.1 41463 2bl0C 142 3.30e+01 1jxhA 288 3.31e+01 c.72.1.2 67415 2hy1A 280 3.32e+01 2h8fB 146 3.32e+01 a.1.1.2 136240 2ez6A 221 3.38e+01 a.149.1.1,d.50.1.1 132616,132617 1r9hA 135 3.42e+01 d.26.1.1 97260 2in0A 139 3.53e+01 3c5vA 316 3.56e+01 1konA 249 3.61e+01 e.39.1.1 72823 1j8yF 297 3.64e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1qpoA 284 3.64e+01 1qpoA c.1.17.1,d.41.2.1 29561,38597 1wyuA 438 3.73e+01 c.67.1.7 121452 2vesA 299 3.76e+01 2r77A 205 3.78e+01 2hsiA 282 4.08e+01 1n3lA 372 4.24e+01 c.26.1.1 79966 1pi1A 185 4.37e+01 a.29.7.1 94699 1em8A 147 4.41e+01 c.128.1.1 90457 1mq7A 154 4.41e+01 b.85.4.1 79404 1jwoA 97 4.45e+01 d.93.1.1 63310 1yrbA 262 4.56e+01 c.37.1.10 123915 2nu8B 388 4.66e+01 2qgoA 141 4.71e+01 1w8iA 156 4.83e+01 c.120.1.1 114368 1shyB 551 4.89e+01 b.69.12.1,g.16.2.1 105565,105566 1w23A 360 4.98e+01 c.67.1.4 114088 1zi0A 307 5.02e+01 1ow1A 195 5.05e+01 b.131.1.3 93625 4pgaA 337 5.09e+01 4pgaA c.88.1.1 35565 1yb5A 351 5.19e+01 b.35.1.2,c.2.1.1 116601,116602 1tazA 365 5.29e+01 a.211.1.2 106734 1mkmA 249 5.38e+01 a.4.5.33,d.110.2.2 79242,79243 1zelA 298 5.43e+01 2bazA 142 5.57e+01 1bdoA 80 5.67e+01 b.84.1.1 28214 2yvqA 143 5.72e+01 1tdtA 259 5.73e+01 3tdt b.81.1.2 28055 3tdt 274 5.90e+01 3tdt 3tdtA 274 5.90e+01 b.81.1.2 28053 2d4zA 250 5.92e+01 d.37.1.1,d.37.1.1 131260,131261 1umwA 237 6.00e+01 d.223.1.2,d.223.1.2 99631,99632 1m6iA 493 6.04e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1e9lA 377 6.09e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1zs7A 190 6.09e+01 b.122.1.1,d.17.6.4 125593,125594 1llaA 628 6.30e+01 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1lla 628 6.31e+01 1lla 1bdo 80 6.36e+01 1bdo 2breA 219 6.37e+01 d.122.1.1 128994 1obbA 480 6.37e+01 c.2.1.5,d.162.1.2 86760,86761 1zwxA 301 6.38e+01 d.151.1.3 125752 1g2rA 100 6.38e+01 1g2rA d.192.1.1 60231 3c8cA 240 6.45e+01 2iwbA 246 6.46e+01 1ef8A 261 6.48e+01 1ef8A c.14.1.3 30921 2gauA 232 6.54e+01 a.4.5.4,b.82.3.2 134894,134895 2cc0A 195 6.56e+01 c.6.2.3 130209 2p67A 341 6.59e+01 1o7dA 298 6.73e+01 c.6.2.1 86641 2hyxA 352 6.75e+01 1sgoA 139 6.77e+01 d.82.3.1 98857 1y6hA 177 6.77e+01 d.167.1.1 116505 1mb3A 124 6.79e+01 c.23.1.1 78907 1j8mF 297 6.79e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 3c9hA 355 6.84e+01 1vf8A 377 6.86e+01 c.1.8.5,d.26.3.1 120029,120030 1q5hA 147 6.93e+01 b.85.4.1 95893 1vpqA 273 7.11e+01 c.1.32.1 113974 1eg5A 384 7.13e+01 1ecxA c.67.1.3 34429 2qi2A 347 7.15e+01 2iwxA 214 7.45e+01 d.122.1.1 137758 1ybyA 215 7.51e+01 1rvkA 382 7.64e+01 c.1.11.2,d.54.1.1 97928,97929 1ly1A 181 7.68e+01 c.37.1.1 74334 2zc3A 168 7.70e+01 2ivwA 113 7.72e+01 1d2fA 390 7.75e+01 1d2fA c.67.1.3 34411 2o6pA 161 7.79e+01 1u9yA 284 7.86e+01 c.61.1.2,c.61.1.2 119655,119656 1k4zA 159 7.86e+01 b.80.5.1 72070 1tuaA 191 7.89e+01 d.51.1.1,d.51.1.1 107321,107322 2ftwA 521 7.91e+01 b.92.1.3,c.1.9.6 134083,134084 2yyyA 343 7.94e+01 2nxfA 322 7.97e+01