# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1htp 131 2.80e-01 1htp 1hpcA 131 2.80e-01 1htp b.84.1.1 28221 1zkoA 136 5.55e-01 1y8oB 128 7.67e-01 b.84.1.1 122759 2gcuA 245 1.64e+00 2vl0A 321 1.87e+00 1nhcA 336 2.22e+00 b.80.1.3 91879 1gycA 499 2.24e+00 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1mzyA 333 2.32e+00 b.6.1.3,b.6.1.3 103848,103849 2q1fA 1022 2.51e+00 1oe1A 336 2.51e+00 b.6.1.3,b.6.1.3 86891,86892 1cb8A 678 2.96e+00 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2i8dA 123 3.08e+00 2evbA 74 3.83e+00 1brwA 433 4.97e+00 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1zi0A 307 5.57e+00 1vrmA 325 5.61e+00 d.96.2.1 120472 1f2tA 149 7.00e+00 1f2tA c.37.1.12 32373 1zdsA 336 7.65e+00 b.6.1.3,b.6.1.3 124952,124953 2qm1A 326 7.74e+00 1nr0A 611 8.24e+00 b.69.4.1,b.69.4.1 86078,86079 2eenA 183 8.50e+00 2gjgA 248 8.70e+00 2o9uX 97 8.76e+00 d.17.1.1 138960 2b0vA 153 9.02e+00 d.113.1.1 127650 1z6bA 154 9.35e+00 d.38.1.6 124510 1xrkA 124 1.03e+01 d.32.1.2 115881 1j9qA 341 1.07e+01 1nif b.6.1.3,b.6.1.3 62765,62766 1us8A 147 1.10e+01 c.37.1.12 99859 1fm4A 159 1.10e+01 1bv1 d.129.3.1 76186 1k8mA 93 1.11e+01 b.84.1.1 68314 2r55A 231 1.32e+01 1ut9A 609 1.46e+01 a.102.1.2,b.1.18.2 99912,99913 1mpuA 138 1.47e+01 d.169.1.1 85040 1e2tA 284 1.52e+01 1e2tA d.3.1.5 37121 1snrA 341 1.53e+01 b.6.1.3,b.6.1.3 105823,105824 1ghj 79 1.57e+01 1ghj 1tdtA 259 1.68e+01 3tdt b.81.1.2 28055 2qt6A 498 1.70e+01 1vmeA 410 1.76e+01 c.23.5.1,d.157.1.3 108893,108894 1orvA 728 1.79e+01 b.70.3.1,c.69.1.24 87354,87355 1poiA 317 1.85e+01 1poiA c.124.1.2 34153 1hfuA 503 1.87e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2ijrA 300 1.88e+01 1a65A 504 1.89e+01 1a65A b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 2a6hC 1119 1.98e+01 e.29.1.1 126264 1bteA 97 2.02e+01 1bteA g.7.1.3 44463 2ppeA 343 2.07e+01 1n26A 325 2.07e+01 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 2durA 253 2.17e+01 1seiA 130 2.17e+01 1seiA d.140.1.1 41463 2nxcA 254 2.18e+01 c.66.1.39 138739 1gxrA 337 2.22e+01 b.69.4.1 70722 1em2A 229 2.31e+01 1em2A d.129.3.2 41321 1bdo 80 2.32e+01 1bdo 1bdoA 80 2.32e+01 b.84.1.1 28214 3tdt 274 2.46e+01 3tdt 3tdtA 274 2.46e+01 b.81.1.2 28053 1hx0A 496 2.46e+01 b.71.1.1,c.1.8.1 61346,61347 1ixlA 131 2.49e+01 d.38.1.5 90717 2e63A 170 2.53e+01 1ti6B 274 2.54e+01 b.3.5.1,d.58.1.5 106976,106977 1qy5A 269 2.54e+01 d.122.1.1 96573 2gw4B 162 2.56e+01 2e4qA 109 2.65e+01 2d5lA 706 2.65e+01 1genA 218 2.83e+01 b.66.1.1 27536 2dyiA 162 2.84e+01 1w5rA 278 2.86e+01 d.3.1.5 120643 1lb6A 160 2.88e+01 b.8.1.1 73798 1gx3A 284 2.88e+01 d.3.1.5 70678 1gpr 162 3.04e+01 1gpr 1gprA 162 3.04e+01 b.84.3.1 28267 1molA 94 3.16e+01 1molA d.17.1.1 37988 2rjbA 455 3.17e+01 2gqpA 236 3.20e+01 d.122.1.1 135513 2b9uA 176 3.24e+01 1v10A 521 3.26e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 2in5A 207 3.27e+01 2bh0A 208 3.33e+01 2d4rA 147 3.46e+01 d.129.3.6 131256 1k4zA 159 3.55e+01 b.80.5.1 72070 2z3zA 706 3.57e+01 2iwxA 214 3.61e+01 d.122.1.1 137758 1v25A 541 3.71e+01 e.23.1.1 108275 1evuA 731 3.76e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 2hrgA 496 3.80e+01 2b06A 155 3.80e+01 d.113.1.1 127624 2h62A 114 3.90e+01 g.17.1.2 136177 2z14A 133 3.95e+01 1ex0A 731 3.97e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2cghA 268 3.99e+01 2j4hA 193 4.11e+01 2p8rA 273 4.23e+01 1rl2A 137 4.37e+01 1rl2A b.34.5.3,b.40.4.5 24610,25342 2hqlA 110 4.38e+01 1pgs 314 4.52e+01 1pgs 1pgsA 314 4.52e+01 b.121.1.1,b.121.1.1 23653,23654 2gllA 171 4.52e+01 1yu4A 381 4.67e+01 b.163.1.1,d.169.1.8 124033,124034 3c8cA 240 4.73e+01 1pyfA 312 4.75e+01 c.1.7.1 95334 2gaiA 633 4.84e+01 2breA 219 4.88e+01 d.122.1.1 128994 1ue1A 164 4.94e+01 b.40.4.3 99243 2hqvA 195 4.98e+01 e.62.1.2 136674 2qh9A 184 5.03e+01 1m6iA 493 5.12e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1q7eA 428 5.16e+01 c.123.1.1 96035 2pjhB 193 5.17e+01 1pt7A 437 5.18e+01 c.123.1.1 95093 1at0 145 5.19e+01 1at0 1at0A 145 5.19e+01 b.86.1.1 28374 1k1xA 659 5.29e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2elaA 175 5.32e+01 1vyqA 173 5.35e+01 b.85.4.1 120548 1vrbA 342 5.36e+01 b.82.2.11 120450 1f8vA 355 5.46e+01 2bbvA b.121.4.4 23329 1vdzA 588 5.48e+01 2qk0A 74 5.50e+01 1u9tA 354 5.57e+01 e.62.1.1 119651 2zdiC 151 5.74e+01 2gbaA 105 5.78e+01 2ej8A 160 5.81e+01 2qe8A 343 5.86e+01 2qnkA 286 5.97e+01 1jdc 429 5.99e+01 1jdc 1jdcA 429 5.99e+01 b.71.1.1,c.1.8.1 27789,28776 2oitA 434 6.07e+01 2d4zA 250 6.10e+01 d.37.1.1,d.37.1.1 131260,131261 3bijA 285 6.18e+01 3bw8A 217 6.34e+01 1l3aA 228 6.35e+01 d.18.1.2 73531 2e1vA 454 6.46e+01 1j1yA 136 6.65e+01 d.38.1.5 90776 2i45A 107 6.69e+01 2cxxA 190 6.69e+01 c.37.1.8 131013 1xdnA 277 6.73e+01 d.142.2.4 115168 1xfpA 142 6.74e+01 b.1.1.1 109587 1j5yA 187 6.82e+01 a.4.5.1,d.94.2.1 71592,71593 1klo 162 6.91e+01 1klo 1kloA 162 6.91e+01 g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1yu3A 381 6.96e+01 b.163.1.1,d.169.1.8 124031,124032 1yu0A 381 6.97e+01 b.163.1.1,d.169.1.8 124025,124026 1yu1A 381 7.02e+01 b.163.1.1,d.169.1.8 124027,124028 1yu2A 381 7.02e+01 b.163.1.1,d.169.1.8 124029,124030 2bbvA 363 7.03e+01 2bbvA b.121.4.4 23323 2gw3A 225 7.27e+01 1wzlA 585 7.37e+01 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2hrvA 142 7.37e+01 2hrvA b.47.1.4 26429 2a15A 139 7.42e+01 d.17.4.3 125973 1o6gA 710 7.44e+01 b.69.7.1,c.69.1.4 81087,81088 1nxmA 197 7.58e+01 b.82.1.1 86385 1wmdA 434 7.70e+01 b.18.1.20,c.41.1.1 109408,109409 1bv1 159 7.71e+01 1bv1 2c0zA 216 7.75e+01 b.82.1.1 129615 1tmxA 293 7.79e+01 1wluA 136 7.84e+01 d.38.1.5 121015 2dt4A 143 7.92e+01 2ivwA 113 7.94e+01 1eaxA 241 7.95e+01 b.47.1.2 64889