# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j99A 293 3.84e-01 c.37.1.5 71618 1brwA 433 1.37e+00 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2qm1A 326 2.44e+00 1v4sA 455 2.85e+00 c.55.1.3,c.55.1.3 100309,100310 2hq7A 146 3.37e+00 b.45.1.1 136657 2gaiA 633 3.91e+00 1wriA 93 5.44e+00 d.15.4.1 114838 1em8A 147 6.67e+00 c.128.1.1 90457 2gcuA 245 6.95e+00 2gkgA 127 7.50e+00 1ybyA 215 7.79e+00 1in6A 334 7.82e+00 1hqcA a.4.5.11,c.37.1.20 62601,62602 1y8oB 128 8.58e+00 b.84.1.1 122759 1in4A 334 8.68e+00 1hqcA a.4.5.11,c.37.1.20 62597,62598 1seiA 130 9.00e+00 1seiA d.140.1.1 41463 2nugA 221 9.25e+00 1jyhA 157 9.69e+00 d.60.1.3 71956 1ru3A 732 1.11e+01 e.26.1.3 97835 2eveA 157 1.19e+01 b.122.1.8 132427 2pjhB 193 1.41e+01 1l1nA 183 1.60e+01 b.47.1.4 73476 1y6hA 177 1.78e+01 d.167.1.1 116505 1egaA 301 1.80e+01 1egaA c.37.1.8,d.52.3.1 32150,38836 2hsiA 282 1.82e+01 1sr8A 298 1.82e+01 e.54.1.1 105959 1uu1A 335 1.91e+01 c.67.1.1 99993 1ko6A 187 1.93e+01 b.119.1.1 77471 1htp 131 1.94e+01 1htp 2asfA 137 1.96e+01 b.45.1.1 127253 1x1oA 286 2.14e+01 2fmpA 335 2.29e+01 a.60.6.1,a.60.12.1,d.218.1.2 133786,133787,133788 1bpyA 335 2.29e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 1jhsA 188 2.29e+01 d.107.1.1 84172 1k8mA 93 2.32e+01 b.84.1.1 68314 1t1jA 125 2.48e+01 c.23.14.2 106249 1iv3A 152 2.54e+01 d.79.5.1 76828 1eq6A 189 2.82e+01 1eq6A d.107.1.1 40796 3bfxA 296 2.82e+01 2v2gA 233 2.85e+01 2ez6A 221 2.89e+01 a.149.1.1,d.50.1.1 132616,132617 1hpcA 131 2.96e+01 1htp b.84.1.1 28221 1konA 249 3.17e+01 e.39.1.1 72823 2p38A 166 3.25e+01 1j8mF 297 3.25e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1zh8A 340 3.30e+01 c.2.1.3,d.81.1.5 125077,125078 2i6jA 161 3.35e+01 2ys3A 137 3.35e+01 1mk4A 157 3.42e+01 d.108.1.1 84979 1uebA 184 3.60e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1ghj 79 3.76e+01 1ghj 1j8yF 297 3.84e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1t90A 486 4.00e+01 1xs1A 193 4.08e+01 b.85.4.1 115892 2cc0A 195 4.13e+01 c.6.2.3 130209 1pt7A 437 4.17e+01 c.123.1.1 95093 2azqA 311 4.22e+01 1jxhA 288 4.28e+01 c.72.1.2 67415 1i52A 236 4.36e+01 1i52A c.68.1.13 61767 1vjqA 79 4.57e+01 k.43.1.1 100830 1kkhA 317 4.63e+01 d.14.1.5,d.58.26.3 72645,72646 1bfd 528 4.79e+01 1bfd 1juvA 193 4.79e+01 c.71.1.1 90912 2ckkA 127 4.82e+01 1umwA 237 4.90e+01 d.223.1.2,d.223.1.2 99631,99632 2vgnA 386 5.02e+01 1q7eA 428 5.06e+01 c.123.1.1 96035 1y0eA 223 5.11e+01 c.1.2.5 116297 1k5cA 335 5.22e+01 b.80.1.3 72076 2ihiA 395 5.25e+01 1o54A 277 5.29e+01 c.66.1.13 92482 1zkoA 136 5.42e+01 2g8sA 353 5.61e+01 1jwoA 97 5.64e+01 d.93.1.1 63310 1tv9A 335 5.68e+01 a.60.6.1,a.60.12.1,d.218.1.2 112675,112676,112677 1osyA 115 5.68e+01 b.1.21.1 93502 1q6zA 528 5.83e+01 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1t3bA 211 5.91e+01 c.47.1.9,d.17.3.1 106341,106342 1cipA 353 5.94e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1xmxA 385 6.00e+01 c.52.1.26 115568 1yn5A 103 6.06e+01 2hy1A 280 6.06e+01 1zq1C 633 6.17e+01 a.182.1.2,d.74.4.1,d.128.1.5 125493,125494,125495 2dyiA 162 6.36e+01 1hufA 140 6.37e+01 1hufA d.195.1.1 61272 1mkmA 249 6.45e+01 a.4.5.33,d.110.2.2 79242,79243 2eenA 183 6.47e+01 2ftbA 125 6.47e+01 b.60.1.2 134057 1udhA 244 6.58e+01 c.18.1.1 31015 1tueB 218 6.63e+01 b.91.1.1 107324 1qi7A 253 6.65e+01 1qi7A d.165.1.1 42210 2f96A 224 6.78e+01 c.55.3.5 133153 1vdzA 588 6.82e+01 2od4A 101 6.90e+01 1gpr 162 7.18e+01 1gpr 1gprA 162 7.18e+01 b.84.3.1 28267 2qybA 181 7.28e+01 2czlA 272 7.33e+01 c.94.1.1 131055 1v5lA 103 7.35e+01 b.36.1.1 108378 2vesA 299 7.41e+01 1frrA 95 7.49e+01 1awd d.15.4.1 37674 1lla 628 7.53e+01 1lla 1llaA 628 7.53e+01 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1u7zA 226 7.61e+01 c.72.3.1 113107 1wo8A 126 7.62e+01 c.24.1.2 121110 2bl0C 142 7.73e+01 1x25A 128 7.74e+01 d.79.1.1 121619 1vh4A 435 7.93e+01 b.80.6.1 100640 2gauA 232 7.99e+01 a.4.5.4,b.82.3.2 134894,134895