Best Alignments for T0397

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2evbA	5.8438e-01	2evbA/T0397-2evbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1y8oB	1.3811e+00	1y8oB/T0397-1y8oB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.84.1.1
1zkoA	1.5547e+00	1zkoA/T0397-1zkoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1hpcA	2.8424e+00	1hpcA/T0397-1hpcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.84.1.1
1bdoA	3.1969e+00	1bdoA/T0397-1bdoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.84.1.1
1bdo	3.5387e+00	1bdo/T0397-1bdo-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3cdxA	8.6379e+00	3cdxA/T0397-3cdxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qj8A	1.1136e+01	2qj8A/T0397-2qj8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1htp	1.1233e+01	1htp/T0397-1htp-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ghj	1.2419e+01	1ghj/T0397-1ghj-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1k8mA	1.8798e+01	1k8mA/T0397-1k8mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.84.1.1
2qf7A	1.9151e+01	2qf7A/T0397-2qf7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2e63A	2.2150e+01	2e63A/T0397-2e63A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2q4zA	2.8136e+01	2q4zA/T0397-2q4zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gjxA	3.3514e+01	1gjxA/T0397-1gjxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.84.1.1
1qjoA	3.7735e+01	1qjoA/T0397-1qjoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.84.1.1
1vqoA	4.1941e+01	1vqoA/T0397-1vqoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.5.3 b.40.4.5
2odiA	4.2403e+01	2odiA/T0397-2odiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bcoA	4.8869e+01	2bcoA/T0397-2bcoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.56.5.7
1mwwA	4.9692e+01	1mwwA/T0397-1mwwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001