# List of top-scoring protein chains for T0397.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rpxA	230	0.7446	c.1.2.2	28536
1labA	80	2.208	b.84.1.1	28226
1mk4A	157	3.259	d.108.1.1	84979
1tqjA	230	7.235	c.1.2.2	107228
1brwA	433	7.280	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
1z6hA	72	7.757		
2ejmA	99	9.111		
1yavA	159	10.29	d.37.1.1,d.37.1.1	116595,116596
1s1iB	253	12.45	i.1.1.1	105176
1efhA	292	19.04	c.37.1.5	31948
1ov4A	293	19.18	c.37.1.5	93581
1j99A	293	22.49	c.37.1.5	71618
2dneA	108	24.22		
1hpcA	131	24.68	b.84.1.1	28221
2czlA	272	32.65	c.94.1.1	131055
1zkoA	136	35.73		
2eenA	183	41.63		
1gjxA	81	44.81	b.84.1.1	65222
2gaiA	633	45.76		
1wzuA	300	49.09	c.145.1.1	121528
2edgA	130	50.49		
1gs7A	336	50.93	b.6.1.3,b.6.1.3	65531,65532
1bxsA	501	57.60	c.82.1.1	35357
1mb3A	124	63.24	c.23.1.1	78907
1seiA	130	64.03	d.140.1.1	41463
1bhuA	102	66.88	b.11.1.3	23631
1h8gA	95	68.43	b.109.1.1	65735
3crkC	87	69.73		
2dyiA	162	72.03		
1nkwN	166	72.34	i.1.1.2	80599
2hyoA	280	72.39		
2bmlA	126	72.65	b.109.1.1	128802
2ap1A	327	73.05	c.55.1.10,c.55.1.10	127108,127109
1hcxA	127	73.27	b.109.1.1	65800
1yx0A	159	74.95	d.108.1.1	124168
1gvmA	136	76.96	b.109.1.1	70612
1pnuN	125	78.58	i.1.1.1	88211
2bazA	142	82.63		
1ndtA	336	84.24	b.6.1.3,b.6.1.3	23108,23109
2hy1A	280	85.61		
1gprA	162	86.61	b.84.3.1	28267
1fycA	106	87.40	b.84.1.1	28230