# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ghj	79	0.1626		
1gjxA	81	0.1964	b.84.1.1	65222
1y8oB	128	0.2351	b.84.1.1	122759
1k8mA	93	0.3097	b.84.1.1	68314
1zkoA	136	0.3526		
3cdxA	354	0.4439		
2evbA	74	0.5371		
1qjoA	80	0.5617	b.84.1.1	28229
1htp	131	0.6630		
1ge8A	249	0.997	d.131.1.2,d.131.1.2	41398,41399
1bdoA	80	1.055	b.84.1.1	28214
1hpcA	131	1.133	b.84.1.1	28221
1at0	145	2.948		
1bdo	80	3.118		
1pfzA	380	3.985	b.50.1.2	26881
1iz5A	249	7.663	d.131.1.2,d.131.1.2	83834,83835
2qj8A	332	8.268		
1p42A	270	10.27	d.14.1.7,d.14.1.7	87754,87755
1y2qA	143	11.27		
1vqoA	240	11.88	b.34.5.3,b.40.4.5	120361,120362
2pkdA	111	12.42		
2hrvA	142	15.06	b.47.1.4	26429
1tq5A	242	16.60	b.82.1.12	119311
2qcvA	332	21.95		
2cdpA	160	23.68		
2dqsA	995	23.95		
2blrA	206	24.23	b.25.1.1	128741
2gu1A	361	25.31		
2pwwA	127	26.33		
2d73A	738	28.24		
2yueA	168	28.99		
2nwhA	317	29.04		
1jj2A	239	29.97	b.34.5.3,b.40.4.5	63084,63085
1aunA	208	30.12	b.25.1.1	23900
1hfuA	503	30.50	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
2icsA	379	32.00	b.92.1.8,c.1.9.14	137241,137242
2f9hA	129	32.02	b.161.1.1	133162
2aukA	190	32.87		
2cavA	445	33.12	b.82.1.2,b.82.1.2	28094,28095
2e63A	170	35.26		
1rkd	309	35.79		
2dc4A	165	37.85		
2d1uA	104	37.89		
1aozA	552	40.15	b.6.1.3,b.6.1.3,b.6.1.3	23124,23125,23126
2ckkA	127	43.37		
1hw7A	255	46.12	d.193.1.1	61297
1avqA	228	46.55	c.52.1.13	33326
2bklA	695	46.64		
1vm7A	311	49.25	c.72.1.1	108884
1z3qA	200	49.87		
2qf7A	1165	50.49		
1wpgA	994	52.19	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
2v78A	313	55.62		
2q2bA	179	57.25		
1pjxA	314	57.53	b.68.6.1	104167
2gtqA	867	60.10		
2dq6A	870	60.37		
2omkA	231	60.47		
1tdzA	272	63.85	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
2ea7A	434	64.57		
1rkdA	309	64.84	c.72.1.1	34928
1thqA	170	65.40	f.4.1.2	106920
1wryA	121	65.77		
2jrrA	67	68.51		
1uxxX	133	68.52	b.18.1.10	100169
1jer	138	70.44		
1pamA	686	70.91	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21846,22515,27753,28740
2qv8A	159	74.72		
1kk1A	410	74.80	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
1a8d	452	75.22		
2qhpA	296	78.99		
1ftpA	133	79.09	b.60.1.2	27199
2z2nA	299	81.61		
1p0hA	318	82.09	d.108.1.1	93866
2fv7A	331	84.38	c.72.1.1	134197
2hgsA	474	85.57	c.30.1.4,d.142.1.6	31722,75997
1v1aA	309	87.96	c.72.1.1	100249
1clcA	639	88.57	a.102.1.2,b.1.18.2	18835,21872